XLOC_028484 (foxm1)


Basic Information

Item Value
gene id XLOC_028484
gene name foxm1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 5807964 ~ 5831522 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055278
CTCACCAAATGCTCACAAGAATCCTGCGACCCGAGTCTTTTATTTACCTTCATCAAAATACATTCTAGCAATCAACACTGCCTGATTAACTCAAATAAAGCACCGTCTGCACGGCTGACATGATATGAAGGTGTTTAAACAGGCCCATTTGCTGTGAGCAAACAATGAGGGAGAGCCCAAGGAGACCCATCATCCTAAAGAGGAGGAAGCTGCCATTTCTGAAGAGTGAATCTGATCTGGGGTGTGATGAAGCTGATGGGACCCGCTGTAAGACCACCTCGACCCAGTCCACTGCTCGCAGCTTCCCTGATGGCATCCGTGTTATGGACCACCCTACTATGCCGGACACACAGGTGGTGGTGATCCCGAAATCAGCCGATCTGCAGAGTGTCATCAGTGTCTTGACGGCTAAGGGGAAGGAGTGTGGGCCTCAGGGGCGAAACAAGTTCATCCTGCTCAGTGGAGACACCAGTTTGGAGGAGAGCAAAACCCTTGGGTGTTTTTCTACAGAACTTGGGTCTGAGCTTGGGAAAGTGAAAAAGGAGTCCGAGTGCTTCCCGCTGGATGACAGTCTGACCAACATTCAATGGCTGGGAAAAATGAGCTCAGATGGTCTTGGATCAGAAAAATGCCCCAACAAAGACAACCCAAATGATAGTCAACAGCAGTCCAAGGGTCCAGAAAAGGAGAATGACCCTCATTCTGAGAGACCCCCGTACTCCTACATGGCTATGATCCAATTTGCGATAAACAGCAAGAATAACAGACACATGACCCTGAAGGAGATTTACAACTGGATCGAAGATCATTTTCCGTACTTCAGAGATGTCGCCAAACCTGGTTGGAAGAATTCCATACGCCATAATCTGTCACTGCATGACATGTTCATCCGAGAAACATCTCCTGATGGCAAGATCTCCTATTGGACGATTCGACCAGAAGCAAACCGCTGTCTCACTCTGGACCAAGTCTATAAGCCTTTGGGTGACCCGTTGACCCCCACTTGCCCTCAGATCCCACAAGTTGCTATCCATCAACAGCAGAAGAGAGGAGCTCCAGAGCTGAAGAAAGCCATACCTGCATTGGGTGGCACAGAGAGGAAGATGAAGCCTCTACTGCCTCGGACTGACTCGTACCTGGTACCCATTCAGCTTCCTCTGGGTCAGTCACTGTTCCTGCCCACCTCCAGTCCCGTGTCTCTCTCCACTCCTCCACAAACTCAAAACTCCTCCACTCCCAGCTCCAGCAAGAGGGTCCGCATCGCCCCAAAGGTCTCTCAGAGCGACTTGAGCTCAGTGTTGCTGTGCAAACCTGCGCCTCAAGAGATAAAGGAGGAGCCTGTGTTTCAGCCTGTGACCTCATCTGAAGCTCCACCCCCAAAAAGCAGACGAACAGACAACAGCAGCTCTCGACGCAAACAGCGCCTGGTCCTCCCAGCCACCGAAGAGCCCGTCCTGCTCTACCCCGACAGCACTCTCTTCGACTCGGGCGTAATCTCTGACATCTCCACCTTCCAGGACACTCGAGAGGCAGACCCCAAACCCGAACTCGACAGCCCGAATCGAGAATACTCTTTTAAAACGCCCATTAAGAGCAGCCACCCTTCCTCATCCACTCCCAGCAAGCTTCCCACTGTGACCCTGGAGCCCTGGAGGATCACGCCTGTTGGGAAAGGAGGCGTCCTAGACTTCAGTCCCATCCGTACGCCAACCGGACCACATGTCACGCCACAACGAAATCAACACACCTCTCTCAGTTTCACCAGCACACCCTTTAAAGAGCTCCCGCTTTTCAACTCCCCTCGAGAGCTGCTCACTTGCTCCCGCTCATCTCCCAAACGCTCTGCTCCTGCCTGCTCTCGGGAGTTGCTGCAAGTCGGTGCTGCAAATCGCTCACTAACCGAAGGTTTCGTTTTGGACACCATGAACGACAGCCTAAGCAAAATACTAGTAGATATCAGCTTCTCCGGCCTAGAGGATGAAGATCTCGGAATGGGAAACATCAGCTGGTCTCAGTTTATCCCAGAACTGAAGTAACTTAATTTTCCAAGCTGCTTACACTTTCTTCACTGCCTTTGATTCCTATTTACTTGCTTTCGATCTCTACTATTTTATATAAGTATTTCTGATATCTGTTGCTTTTTCACTGCCTTTTACTGTTTTGGATGTTTAGGACCGCTTTATTTGGCGAGGGAAACTGTTAGTGACGAATGTACTTAGAGCGAATTAATTTGCACAAgttgtaatatataaatatgagtgtgtgtttgttagagagaaagagagagagtgtgtatttGGAAGTAAAAGGACATACGGATATACCAGATTATTTACACTACCCAATTATACAGTATTTCTAGTTCAACATGGCTTATCACTTGGTTTAGCTGGATAGACTGAtggtaaaagagatttttaagaGGATTTGGGGCTGTAAGACAAACCTATTGGTTCTCCTATGGTGGTGATACATGGGGCAACTTTTAATTTGAGCAGAAAGATGTTGCTTGGCTATAGAATGAGGAACAATATTGTATCTTTAACCTATTGACCTAAATATTTGCCCCTTGTCCCACCTGGTTGGCCATTTATGGCAATATTTCCCAAAGTTTCCCAGCAACATTGCTCAAAAAGTTCCCCCGTGTATCCTCAGCATTAGAATTAAGGGTTGCTAGTTCATTTGGTTGTGTACGTCTTGCACTTTTTTATACTGTTCAAGAAATTGACATCCATCTGGAGTGTATTGAACTGtttaacatcccataatgtgTTTTTTATGGTTGAAAGAGTGTTGGAATAGTGACTCCTCTCTGCTGCTGCTTTTCTGCGTTCATGTCCTTTTGCTATTAAGAACAATTTTAGCGCTCTGGACGTTGGATATGACCAAGATGAGCCATGAAAGAcaacttttaacatttatttcaatatGTAGCGTGATCAGTGAGCATGCACAGAGTTCACTGTTGCTTAAAAGACTACcattaacatgttaattcatcatATGTTCTATATTATTCCAATGTACAAAAGAAATACAGCaaggtgtcttaaaaatatacatatcaGATCTACATGTTTGACAGATGTGGGATGATATGATGGCTTGCTTGCATATAAGCATTAGAAATTAAATACTTTATGCCAAAATAGTACATTCATGCACAGAAAAATCCGTCTTTTTCAGTACAACAAGAGCTTTTCTGTATGCAATATGTGTTGGTATGACAGTTTTTCAACAGCATAACATTTCGACAGATCTTTCAAATCTTTTGCCCGTGAAATAACAGGGTGTTTTTTGTAATACTGTTGAATACCGTCATGAAATATGAACTTTGTTGTCTACTTGGCATTTACACAGCAATAAAACAGGCTTTAACCAGGAA
>TCONS_00055279
CAGACACATGACCCTGAAGGAGATTTACAACTGGATCGAAGATCATTTTCCGTACTTCAGAGATGTCGCCAAACCTGGTTGGAAGAATTCCATACGCCATAATCTGTCACTGCATGACATGTTCATCCGAGAAACATCTCCTGATGGCAAGATCTCCTATTGGACGATTCGACCAGAAGCAAACCGCTGTCTCACTCTGGACCAAGTCTATAAGCAGCAGAAGAGAGGAGCTCCAGAGCTGAAGAAAGCCATACCTGCATTGGGTGGCACAGAGAGGAAGATGAAGCCTCTACTGCCTCGGACTGACTCGTACCTGGTACCCATTCAGCTTCCTCTGGGTCAGTCACTGTTCCTGCCCACCTCCAGTCCCGTGTCTCTCTCCACTCCTCCACAAACTCAAAACTCCTCCACTCCCAGCTCCAGCAAGAGGGTCCGCATCGCCCCAAAGGTCTCTCAGAGCGACTTGAGCTCAGTGTTGCTGTGCAAACCTGCGCCTCAAGAGATAAAGGAGGAGCCTGTGTTTCAGCCTGTGACCTCATCTGAAGCTCCACCCCCAAAAAGCAGACGAACAGACAACAGCAGCTCTCGACGCAAACAGCGCCTGGTCCTCCCAGCCACCGAAGAGCCCGTCCTGCTCTACCCCGACAGCACTCTCTTCGACTCGGGCGTAATCTCTGACATCTCCACCTTCCAGG
>TCONS_00055280
CAGCCTTTGGGTGACCCGTTGACCCCCACTTGCCCTCAGATCCCACAAGTTGCTATCCATCAAGTAAGCTACGCTAATTCCTCTTCTCATGGCAGAAGCACAGGGTGTAAGACAGACAGCAGCTTCTCTccttacagttattttatttcagggacagacaGAAGGATGCCGTCAGCTTCAGATCATCTCTTGATTTGTTCCTTTAATCAGCAAAAAGACAGACAGCATTGACATCGCAGTTAGTGTGAATGTCAGATGgtgtacaaaaataaatagaGTCTCTTTGTTTTCTGTAGCAGCAGAAGAGAGGAGCTCCAGAGCTGAAGAAAGCCATACCTGCATTGGGTGGCACAGAGAGGAAGATGAAGCCTCTACTGCCTCGGACTGACTCGTACCTGGTACCCATTCAGCTTCCTCTGGGTCAGTCACTGTTCCTGCCCACCTCCAGTCCCGTGTCTCTCTCCACTCCTCCACAAACTCAAAACTCCTCCACTCCCAGCTCCAGCAAGAGGGTCCGCATCGCCCCAAAGGTCTCTCAGAGCGACTTGAGCTCAGTGTTGCTGTGCAAACCTGCGCCTCAAGAGATAAAGGAGGAGCCTGTGTTTCAGCCTGTGACCTCATCTGAAGCTCCACCCCCAAAAAGCAGACGAACAGACAACAGCAGCTCTCGACGCAAACAGCGCCTGGTCCTCCCAGCCACCGAAGAGCCCGTCCTGCTCTACCCCGACAGCACTCTCTTCGA
>TCONS_00055281
ATCTTTCAGAACTACAAACGTCATTTTGGAGTCGTTAGCCAGAAGCGTCGgttaaacagatcttttaatcggTATATTCTCCGCTATTTGcgataatatttgatatttgtcaATAATTAATGTGTATTTTCTATACGAGCACTTGATTTAATATTGTCACGCTATTATTTGGGTGGTTTATCATTGTTACACTTCTGCAAAGCTTCCAGTGTGTTTAAACAGGCCCATTTGCTGTGAGCAAACAATGAGGGAGAGCCCAAGGAGACCCATCATCCTAAAGAGGAGGAAGCTGCCATTTCTGAAGAGTGAATCTGATCTGGGGTGTGATGAAGCTGATGGGACCCGCTGTAAGACCACCTCGACCCAGTCCACTGCTCGCAGCTTCCCTGATGGCATCCGTGTTATGGACCACCCTACTATGCCGGACACACAGGTGGTGGTGATCCCGAAATCAGCCGATCTGCAGAGTGTCATCAGTGTCTTGACGGCTAAGGGGAAGGAGTGTGGGCCTCAGGGGCGAAACAAGTTCATCCTGCTCAGTGGAGACACCAGTTTGGAGGAGAGCAAAACCCTTGGGTGTTTTTCTACAGAACTTGGGTCTGAGCTTGGGAAAGTGAAAAAGGAGTCCGAGTGCTTCCCGCTGGATGACAGTCTGACCAACATTCAATGGCTGGGAAAAATGAGCTCAGATGGTCTTGGATCAGAAAAATGCCCCAACAAAGACAACCCAAATGATAGTCAACAG

Function

symbol description
foxm1 Predicted to enable DNA-binding transcription factor activity and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of cell population proliferation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within G2/M transition of mitotic cell cycle and regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human FOXM1 (forkhead box M1).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0042127 regulation of cell population proliferation biological_process
GO:0000086 G2/M transition of mitotic cell cycle biological_process
GO:0006978 DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:2000781 positive regulation of double-strand break repair biological_process
GO:0071156 regulation of cell cycle arrest biological_process
GO:0001570 vasculogenesis biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:2000377 regulation of reactive oxygen species metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0019901 protein kinase binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1275 Predicted to enable DNA-binding transcription factor activity and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of cell population proliferation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within G2/M transition of mitotic cell cycle and regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human FOXM1 (forkhead box M1).

Ensembl:

ensembl_id ENSDARG00000003200

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055278 False 3385 mRNA 0.45 9 5807964 5831522
TCONS_00055279 False 695 mRNA 0.54 5 5809831 5826320
TCONS_00055280 False 742 lncRNA 0.52 3 5809866 5825924
TCONS_00055281 True 745 mRNA 0.46 3 5827140 5831036

Neighbor

gene id symbol gene type direction distance location
XLOC_028483 pgm3 coding downstream 12655 5784970 ~ 5795309 (-)
XLOC_028482 ccnc coding downstream 32457 5764486 ~ 5775507 (-)
XLOC_028481 faxca coding downstream 43709 5750854 ~ 5764255 (-)
XLOC_028478 NA coding downstream 62079 5693170 ~ 5745885 (-)
XLOC_028485 slc5a8 coding upstream 18703 5850225 ~ 5863906 (-)
XLOC_028486 arl1 coding upstream 75436 5906958 ~ 5913338 (-)
XLOC_028487 NA coding upstream 281919 6113441 ~ 6116670 (-)
XLOC_028488 NA coding upstream 346064 6177586 ~ 6252483 (-)
XLOC_028489 MDFIC coding upstream 508050 6339572 ~ 6416414 (-)
XLOC_028480 NA non-coding downstream 68026 5739010 ~ 5739938 (-)
XLOC_028479 NA non-coding downstream 70619 5735370 ~ 5737345 (-)
XLOC_028474 NA non-coding downstream 254782 5545002 ~ 5553182 (-)
XLOC_028471 NA non-coding downstream 348495 5421746 ~ 5459469 (-)
XLOC_028491 NA non-coding upstream 745255 6576777 ~ 6580547 (-)
XLOC_028493 NA non-coding upstream 1188928 7020450 ~ 7024297 (-)
XLOC_028494 FO681358.2 non-coding upstream 1353673 7185195 ~ 7185311 (-)

Expression


Co-expression Network