RNA id: TCONS_00058035


Basic Information

Item Value
RNA id TCONS_00058035
length 639
lncRNA type antisense_over
GC content 0.44
exon number 3
gene id XLOC_028478
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 5693170 ~ 5745885 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTATAGGAGAGAAGTACTAGGCTACTTCTGAGTGTTTTCTGAGTACTCCAAAGTACACTTCAAAACCTTTTTAGATAATTCGAACACGTTCCATGAACGTTATACAGTAGCATGACGTGTTTGTGTTGACCAGAAAACTAACAAAGATTCTATCAAGTCAATAACAGAACGTTCGAAATATTTCCGGGAACTTTGCTTGTTAGCCAACCGTGACTTTAATTTGAACTGGTTTGTTTGAGGCACAACAAGTAATGTCTACGTTAATATTTGGCTTAAGGGAACACAACGGATTTGAAGTGAGGTTTTAAAGTTGATCTACGGCCCCGAGAGACTCATCTAAACATGTTTTATGTTCACCTGCACAACACGACAACTTTCAAAGTGTTGGTCAGCTGTGAGCGAAGGCCTATTATACTGCTGATAAAAGAGGGCCAGTTCAGCGCTCGCTGTTAAAGCCCCCACTGCGCACACGCACAACTCAGCTCTTTCACACTGTATTCTCTGTGcgcctcctctctctctctctctctctctctctctctctcagtgcaGCTGATAAAGCCTCTCTCTGCGTTTCCAGGTCTGCCACCCTCACATCAGCCAGACACTGATCTCTGCCAAGCTGTCAATCAAACCCG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058034 lncRNA downstream 154849 5545002 ~ 5553182 (-) True XLOC_028474
TCONS_00058033 lncRNA downstream 248562 5453571 ~ 5459469 (-) True XLOC_028471
TCONS_00058032 lncRNA downstream 249065 5453571 ~ 5458966 (-) False XLOC_028471
TCONS_00055268 lncRNA downstream 249072 5453571 ~ 5458959 (-) False XLOC_028471
TCONS_00055266 lncRNA downstream 252435 5453571 ~ 5455596 (-) False XLOC_028471
TCONS_00055280 lncRNA upstream 63993 5809866 ~ 5825924 (-) False XLOC_028484
TCONS_00057320 lncRNA upstream 367568 6113441 ~ 6116670 (-) True XLOC_028487
TCONS_00058039 lncRNA upstream 431713 6177586 ~ 6252475 (-) False XLOC_028488
TCONS_00058042 lncRNA upstream 431713 6177586 ~ 6252483 (-) False XLOC_028488
TCONS_00058041 lncRNA upstream 431713 6177586 ~ 6252483 (-) False XLOC_028488
TCONS_00055274 mRNA downstream 16774 5665182 ~ 5691257 (-) True XLOC_028477
TCONS_00055273 mRNA downstream 56001 5645251 ~ 5652030 (-) True XLOC_028476
TCONS_00055272 mRNA downstream 110229 5587615 ~ 5597802 (-) True XLOC_028475
TCONS_00055271 mRNA downstream 110864 5587183 ~ 5597167 (-) False XLOC_028475
TCONS_00055270 mRNA downstream 112794 5568688 ~ 5595237 (-) False XLOC_028475
TCONS_00055275 mRNA upstream 4981 5750854 ~ 5764255 (-) True XLOC_028481
TCONS_00055276 mRNA upstream 18613 5764486 ~ 5775507 (-) True XLOC_028482
TCONS_00055277 mRNA upstream 39097 5784970 ~ 5795309 (-) True XLOC_028483
TCONS_00055278 mRNA upstream 62091 5807964 ~ 5831522 (-) False XLOC_028484
TCONS_00055279 mRNA upstream 63958 5809831 ~ 5826320 (-) False XLOC_028484
TCONS_00055263 other downstream 336409 5370056 ~ 5371622 (-) True XLOC_028470
TCONS_00055239 other downstream 775507 4930411 ~ 4932524 (-) True XLOC_028460
TCONS_00055225 other downstream 1137226 4546209 ~ 4570805 (-) True XLOC_028452
TCONS_00055220 other downstream 1211240 4492566 ~ 4496791 (-) True XLOC_028449
TCONS_00055185 other downstream 3021941 2675106 ~ 2686090 (-) False XLOC_028423
TCONS_00055293 other upstream 690891 6436764 ~ 6451732 (-) False XLOC_028490
TCONS_00055295 other upstream 819780 6565653 ~ 6567266 (-) True XLOC_028490
TCONS_00055299 other upstream 1439322 7185195 ~ 7185311 (-) True XLOC_028494
TCONS_00055301 other upstream 1476207 7222080 ~ 7222367 (-) True XLOC_028496
TCONS_00055306 other upstream 1934106 7679979 ~ 7680095 (-) True XLOC_028504

Expression Profile

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