LOC110536409 (LOC106570807)


Basic Information

Item Value
gene id LOC110536409
gene name LOC106570807
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 76848974 ~ 76856364 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021622173.2
GCGCATGTGTAAAACAGGTTTCACCATGGTAACGTTGTTgcaacatttgtaaaaaattgaAACGCCACGCCGCCTACAATGTTTTTACAGTCCACAGTAATTCATTAATGAATTAGTTAATTTCATACAATTTGCGGGACTATGCTACACTCTTCCATCGATCGAATGCTTTACTGCTGTGGAATGTTACTCACGTTCTAATCTAACTGTCCCGTTCTATGACGCCACAGTAATTGGAATGGAATTTGGAAGCATCTTAATTTTGCTCGCTGAGAATCCTGAGTGCAAAAGGCTTCATTCAGTTCAGTGGAAGTTTTATTGGTGAATCACGGTTCAGTCTTCAAACTCAGTCACCATGTCTGATACCAAGATGTATTACAGCAGACCAACTCTTATTTCCAATTGGCATAAAAACAGAGAGGCCGAACCCAAAGACTATGACTTCACTCTGTGTCCAGATGGAAAGAAGAAACTCAGTAAATCTACCTACAAACACTTTGGAACCTACATGGATGCTGATTGGAGCACAAGCACAGAAACACAAATGTCACAGTATCTACTGAAGAGAGATTATGAGCCCAAGAAGATTCTCAAGTCTATGGTAGAGGCTGGCCACTTCCAGTCTGCAGACTTTGACAAACGTACCGTCAGAGACACAGCAGGACATGTGACTGGTGTGACCAATAGCATCCTGCCACATCATCGCCCCGAGCATGACAAGATGAAGTTGGACTCCACATATGCAGTGGATTACCTGCCCCCGTGGGACTCCAGCAAAGAGGCGAGGACCATGAAGAGCCGAGCAGCAGACAGCATTCCTGACTACAGGAAGCCCCAGTCCCAGTTCACAGACACCGCCGACTACCGTCGCGGGGGCAGGAACACCTGGCAGGATGAGAGCGGGGTCTATGGTACCCTGGGGGCCACATCCAGGGCCAAGGCTCAGCCATCCAACCCTATCTGCACCTAGAACCCTCCCCCTCCCTGGGGAACAACCACAGCATGGCCTCCTTAACCAGGTTCTCACTGACCAAGACTATTCTTCTCACTACAGACTTTACTGTAGCAACTTTTTACCTCAGTATTTATCTTTCTTTCACCTCGAGCTATTGCTGttttgtcattgttacatgaatAAAGCAAGTATTGCATGTA

Function

NR:

description
uncharacterized protein C9orf135 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021622173.2 True 1155 mRNA 0.46 6 76848974 76856364

Neighbor

gene id symbol gene type direction distance location
LOC118937404 LOC106570822 coding upstream 186747 76617410 ~ 76662227 (+)
LOC110536406 LOC106570821 coding upstream 248408 76396096 ~ 76600566 (+)
fxn LOC100194686 coding upstream 464396 76371045 ~ 76384578 (+)
LOC110536397 LOC106570810 coding upstream 695254 76150401 ~ 76153720 (+)
LOC110535118 LOC106570809 coding upstream 717850 76110124 ~ 76131124 (+)
mamdc2a LOC106570826 coding downstream 33335 76889699 ~ 76939449 (+)
slc39a14 slc39a14 coding downstream 87356 76943720 ~ 76991807 (+)
LOC110536652 NA coding downstream 153206 77009570 ~ 77010847 (+)
LOC110536412 LOC106570827 coding downstream 159083 77015447 ~ 77035436 (+)
LOC110535120 LOC106570830 coding downstream 226590 77082954 ~ 77125426 (+)
G1019184 NA non-coding upstream 32417 76816204 ~ 76816557 (+)
G1019178 NA non-coding upstream 40532 76808219 ~ 76808442 (+)
G1019173 NA non-coding upstream 42648 76806022 ~ 76806326 (+)
G1018841 NA non-coding upstream 47881 76800712 ~ 76801093 (+)
G1018836 NA non-coding upstream 64528 76784202 ~ 76784446 (+)
G1019226 NA non-coding downstream 21742 76878106 ~ 76880791 (+)
G1019242 NA non-coding downstream 47715 76904079 ~ 76907220 (+)
G1019246 NA non-coding downstream 60574 76916938 ~ 76920807 (+)
G1019251 NA non-coding downstream 80866 76937230 ~ 76937615 (+)
G1019300 NA non-coding downstream 168745 77025109 ~ 77090122 (+)
G1019189 ptar1 other upstream 27006 76818505 ~ 76821968 (+)
G1018678 NA other upstream 323407 76524138 ~ 76525567 (+)
G1017593 NA other upstream 1520237 75269723 ~ 75328737 (+)
LOC110535110 LOC106579812 other upstream 3680532 73155366 ~ 73254792 (+)
LOC110536414 NA other downstream 277527 77131426 ~ 77139724 (+)
LOC110536420 NA other downstream 551665 77407991 ~ 77410527 (+)
G1019753 NA other downstream 611865 77468229 ~ 77469925 (+)
G1019804 fam151b other downstream 759966 77605155 ~ 77618204 (+)

Expression


Co-expression Network