LOC118937890


Basic Information

Item Value
gene id LOC118937890
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 57658505 ~ 57661561 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939658.1
TCAAACAGCCGACGATATGGAGCTCGAAGAAGCACACCTCACCAACCCCAACAACTTCCCTACGAAACTGCCTGGTGAATAACCCCAAAAATCAATCAATATGTTGGGATCCCTGTGGTGTTTAAAGCAGAGCTGCTGTCACCTCAGAAGCAAATGTTTGACACCATTGACTGTTTCAAAACGACCAACTTTACAAGTTTAAACCGCCAGCTGAATCTTTGTCGGTTCAGGAAGATGACCCATGGCCCCAGGGGCTCGGGAAAATAATGATTGCTCAATGGACAGGATACAACACACCTTCCAACTTCAAACAAGATCCATCCAAACTGCTGGTGAATCTAAAGAGGCTGATGAGCAAAAACAAGGCGAAGATGGAAGCTGCCCAATAAGTGAACTGTCGGTCCCCCAAAAGTTTCCGGCGACTCATGGccaatagtggtggtggtgaggagGAGGTCAAAGTAGAGAAAAGAGATTCACTCAAATTGTCAATCACGTCTGTACCCTGTATTTAAAATGAAACAAGTAACTACAGTAATTTAATTGCCAATAACACAAAGAACAGTCTTATTTGTGCCATAGCATGTGTTTCATAATTTCTCAGCCTTGCTATAATTCGGTTTCTACAGGTTACATGTTTGTTCGACAGGTACACCGACCGTCTCcttaccaacattacaaccaAAGCAGAATCCAGACCATGAAGGAGTATGATTGGACCCCCATCCCACCCCGCGGCTGTATCATGGGTCATGGGGATGTCCCCTCCCCTACGACCATCTACACAGACAAGGGAATCCCCATATCCGTCATCCACCCCTTCCCTTCAGACACTTCCTGCTCTGTGCAGTCCAGTCCAGCTACTGCACACATCCAGCAGGGTTCACAAAGCCTGGCAAACGCTAGGCCCAAGTTCAACACCTTCATCCCTCACCATGCTGGTTTTTATTCCCCTGGTTCAATGTTCAATGGACTCAAACTGTCATAGTGTCCACCAGACAACTCCCTCATACTCTCATTACAGCTACTACCAGCCAACCTGTCCTGTGGGGTTTCTGTATCATGGCAATCAAAACCAGGACTGGCAGAGCAGGGAAAACAAGGAGACCAAGAAGAGTGAAGTCAACTTGGACACAGTTTTCCAGATAGTGGACGAGCTGCACCACAGTTCCCCCAAAATACGCATGGTCAAACTGTAAACCCCAGAGCGCCAGCAGCCGGTCCTGGCCACCTCTATATCATCAGGGCCCCAGCCCACCACCAATATCAACAGCTCACCATCTCTTCCCAGATTGACTCCTCTGTCAAATCCAGCTTCCTGCCTGGCACAATACTGATGGATGCCAGCACAGTGACTCCATGAGGGTCCATCATTATCATTAACAGTCCCGGTGAACATTCCTTCTCAGGGAATTGCCATCATGGTCGGTGGTCATGCAGCTGATCAGCCAGTCAAGAGGGAGGAGGAACCTTTGCCTGTCGACGCCTATCAGAAGGTTAGCTAGCCTAGCTTAGTAAAAACATGGTACATGGAGGCTATTATTCATCAAGAAACAAACCAGTGTACCTAAGCTCATCGTATAGTTTAATAATTTGGGGTTTAAAGAATTTAGAATTGTGAATGTAAAGAGAAAGCAAAGATACTCAGTCCGTATTCCTTGgtaataaatatttttaaaaacatgtaTCATATGAATGGTTATCAGGGATCCTGATGAACTCTGTTTTATAATAAGAGGTTGATCATGCTGTGATTTATCCCAGTGCCCTAAGGAAGCATCCAAGTACATCACCAAGGTGAAGGACGTAAAGGAGATCAAGGGGGTGGATGCAGAGGTCTTCAGTGTTGTACATGACGTTTCAGTGTTGTACATGACGTTTCAGTGTTGTACATGACGTTTCAGTGTTGTACATGACGTTTCAGTGTTGTACATGACGTTTCAGTGTTGTACATGACGTTTCAGTGTTGTACATGACGTTTCAGTGTTCTACATGACAAGTTTCAGCATCCTGGCAGAGGCATCTAGGTTTTtagctaaaatgtcctggtactgggtaaagttcatgataccaccaccatattttacagtaggtatggggttcttttctgcAGATGCAACTTTCTTTCGAtggtgtgtgtggccaaagagctTTATATCCATGTACTCAACAAATGTATATGCCTGGTGTTTGCTGAACAGCGTTGGCACTTGGATTGCAACTACTGCTATGGTTAGATGAAAATGAAAAtaaagctctttggccacgcGCACCAGTGAAGAGTTTTGCGTCGAAAGAACAATGCATATGCAGAAAATACCTCAtctctactgtaaaatatggtggatgttatggggctattttgcttctacatgtcctggggcccttgttaagatCAACGGCATCATGAGATTTACCAAATACAAGGAGGAAATGTTTGCCAAAAACCTAGTTTCCTCTGCCggagtggatcttccagcaagacaataaccccaattACATAAATggttaattggccacaaaatcaacaGTTTGCAGTGGCACTCTGTCTCCAGAATTGAACCCAATTTGAAAATCTGTGGTTTGAactgaagagggcagtccatgagcacagacaaaggatatcaggggcctggaaagattctgtattgAGTAATGGTTTAAGATCCCtctcaatgtgttctccaatctcataaaacatttttagaaaaaggctgtgaAAAGCAACAAATCTATTTTAAC

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939658.1 True 2742 mRNA 0.44 3 57658505 57661561

Neighbor

gene id symbol gene type direction distance location
LOC110537838 LOC106567401 coding upstream 40153 57436332 ~ 57618352 (+)
hspb1 hspb1 coding upstream 301231 57350942 ~ 57357274 (+)
LOC110537834 srrm3 coding upstream 312487 57190975 ~ 57346018 (+)
LOC110537833 LOC106567405 coding upstream 473139 57146515 ~ 57185366 (+)
LOC110537832 LOC106567406 coding upstream 526903 57126747 ~ 57131602 (+)
LOC110537840 rnf43 coding downstream 278 57661839 ~ 57836268 (+)
LOC110537841 mtmr4 coding downstream 231780 57893341 ~ 58071571 (+)
ca4a NA coding downstream 415360 58076921 ~ 58101536 (+)
LOC110537844 LOC106567395 coding downstream 498397 58159958 ~ 58184449 (+)
LOC118937686 NA coding downstream 554581 58216142 ~ 58222215 (+)
G1091771 NA non-coding upstream 7441 57650520 ~ 57651064 (+)
G1091769 NA non-coding upstream 9615 57648559 ~ 57648890 (+)
G1091764 NA non-coding upstream 18364 57639721 ~ 57640141 (+)
G1091502 LOC100136198 non-coding upstream 290956 57362463 ~ 57367549 (+)
G1091608 NA non-coding upstream 296233 57362057 ~ 57362272 (+)
G1091783 NA non-coding downstream 7144 57668705 ~ 57668956 (+)
G1091938 NA non-coding downstream 288624 57950185 ~ 57950449 (+)
G1091964 NA non-coding downstream 332725 57994286 ~ 58063360 (+)
G1092052 vkorc1l1 non-coding downstream 499681 58161242 ~ 58202692 (+)
LOC110537831 dhx33 other upstream 540578 57112902 ~ 57118165 (+)
G1091235 NA other upstream 905558 56752418 ~ 56752947 (+)
G1091217 NA other upstream 932502 56725607 ~ 56726003 (+)
LOC110538908 LOC106603872 other upstream 3377784 54253719 ~ 54283905 (+)
G1087914 NA other upstream 3509543 54109690 ~ 54148962 (+)
G1093909 NA other downstream 1879997 59541558 ~ 59542603 (+)
G1094218 LOC100380853 other downstream 2369442 60031003 ~ 60034020 (+)
G1095244 LOC108238713 other downstream 2724103 60385664 ~ 60385973 (+)

Expression


Co-expression Network