LOC110537833 (LOC106567405)


Basic Information

Item Value
gene id LOC110537833
gene name LOC106567405
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 57146515 ~ 57185366 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021624252.2
GAATTTACCTCAGTCCAAAACCGGGGGAAAAGTTCATTGCAGCGCGGAACACGTTTAATTTTATACTGGAATGGCAATGGCAGAAATAATGTCCCCGGAATTGTCTCAgggacaaggacaaggacaagGAAAGCAGAACCAGCTCAACGACTTAGAATCAGATTCGGACCAAGAGGAAGATCATGCGGCGACCACCGGGACTGGACCGGCTGTTGCTGGCTCTTTTCTCCGCGCGCAGGTCATCCATAGCGGACACTTTATGGTGTCCTCCCCGCACAGCGACTGCACCCCGCGGAGACGGAAAAGCGGTGCTACGGTGCGATATGATTTCGATACGGTGAACAGGACTTGGTGTCAAACATACAGATTCGGTCCGCTAAGTTCTGGGAGCCTTAGCATCGACCCAACGCTGACCCGGTTATTTGAGTGTATGTCACTGGCTTACAGTGGTAAAATAGTCTCTCCGAAGTGGAAGTCTTTCAAAGGCCTGCGGCTGCTCTGGAGAGACAAAATCCGTCTGAATAATGGAATCTGGAGAGCCTGGTTCATCCAGTacgtggagaagaggaagaaccCTGTGTGTGGGTTCGTCACCCCACTGGAGGGCTCCGAGGCCGACGCCCATCGCAAACCTGAAGCTATAGTTCTAGAAGGCAGCTACTGGAAGCGTAGGATCGAGGTAGTGATCAAAGAATACCACAAGTGGAGGATCTACTACAAGAAGAGGCTTCAGAAAAACAAAGATGGCCTTTTGTCAATGCTACAGAAGGGTCAGATCTGCAGGGCGGAGCTGGAGAAATGGTCCAGTCAGATGTACCAGGAGCCTGAGGTCATGCCAGAGGAGGTCCACATGTTTGACCTGGACTGCTTTCTGTCCGACATCTCTGACACCCTGTTCACCATGACCCAAAAGCCCTGCCCGTGGGCCAACGACCGGCACAACACGTACACCAGCAATGCTGACATGATACAGCCAGGTCTCACCCCACTGCAGCCCAATCTAGATGACTTCATGGATATCCcagATATCTTTATGAGCTACCGGGGCCAGTCATTGGAGCAGGCTGCTTATGCTGACTGTGGCTACTTTGAGAGCTCCTCCAGCGGGGCTTTCCCCTCTGTGTCCAGCCCTGTGGTCACCGTTCCACAGCTACACGTCGACACTCAACTAGCTCAGTCCAACCTCTCATCTGACAGCCTGTCTCAGCCCTCTTCATCCAACTCTCTGTCAGGCCCTGGCTACCACAGACAACCCCTGACCTCTGAAATTACCTTCAACCCCACTAACAACCCCAAGTTCAAAGGTCACCAACAACAGGATTTCCACAGCGAGTACCATACTCCCAGCATGGTATCAGGGGCCATGCCCTCCTATGGACACCAGGCTTACTCCGGCGCCGCCGTCTCCATCGCAACCACCAACATACAACAGCAGCCCGTCTCCCCAGGAGACGGAACCTTTTTGTATCCGCCTCCCTGTCACAAGTACGGTTACCACGCCACCACTGCCAGCTCAGTGACCTCTACCGTCATCACCCACACGGGATCCACTATGGGTGGCAGTATTCTGGGATCGGATCCCCAGGGTCATCACGGGTACTCCACCACGGGAGACATGTACTCCCCAACATCCTGCCTCTCTCAGGGGTACTCGTCCGTGGTCTCGGCCCCGGCCCTGCCCTCTCTCAGTGTACCTCCTCACTGCTTCTCAGCCCCACAGCAGCCGGGTGTGGCAGGTGGTAGAAGGGGGAAGCACAAGCAGAAGACAGCAGTGGGGGTGCAGATGGGGTCCCGTCTGTCCACCCCTCAGACGGCTCCCCCCCAGACCAGCTTCCTGGCAAAACTACTGTCCTCCAGCACCCAAGAACGCAAACCAACGCTGGGATTCGATGCAACTTTAGTAGCAACCAAAGGGCACAGGTCAACCTCTCCCAACTCTCCAGGCTCAACACACCCCAACATACCTCTCCTCATCCCCAAGACAGAAAAACTCTCCCCCGTACAGATCTACGGTTCTGAGAGAACTAGTTTAACAGtgagCTTCTCGGGACACTCAGGGCAGATGTCCCCAACCAACCTTCTAGAGAGGGCATCCAACACTGAGTCTCCGCACTCCTTACCTGGACATTCCAAAATGGAGTCAAACAAGACAGAGACCAGGAGGATAACTCACATCTCTGCTGAGCAGAAGAGACGTTTCAACATCAAGCTAGGCTTTGATACTCTACACAGTCTCGTCACCACACTAAGCTCTCAGCCAAGTATAAAGGTCAGCAAGGCTACAACGCTACATAAGACAGTCGAGTACATAAGTAAGATGCAGCAGGAGAGATCTCAGCTACATGAGGAGGCTCAGAGACTCAGGGACGAAATTCTGCTCCTCAACTCTGCCATCAATGTATGCCAGCAGCAGCTGCCTGCCACCGGTGTGCCCATTACCCGTCAACGCTTCGaccacatgagggagaagttCAGAGAGTACGTCCGGGCGCAGACACTACAGAACTGGAAGTTTTGGATCTTCAGCATTATCATAGAGCCCTTGTTTGAGTCCTATAACGGGATGGTGTCCACAGCCAGTGTTGAGGATCTTTGTCGCACCACTCTGTCCTGGCTGGACCAGCACTGCTCTCTGCCTGCCCTCAGACCCATGGTCCTTAGTTCACTCCGTCTCCTGAGCACCTCCACGTCCATCCTGACAGACCCCAGCCTGGTGCCAGAGCAGGCCACCCAGGCGGTCACCCAGGCTAAGGGCCTCCCCCAGCCTCACCTCCCTGGCCAACCGCAGGACCACTGAGAGACCGTAGCCTGCTCCCCAAGCAAGCCACCCAGGTTGTCACCCAGGGCCTCCCCCACCCTACCCATCCCCAGGACCACTCCCCCTCCACGTGGCCCATTAACAGGGAAAACACACAGCCTATGTGACCCTATGGAACATTATAGTACCCTGTAACACAAAAGCCCAGTGACCCTACTAAACATTTTGAATACCGTAGATTGAAAACCAAACGGTGCCACTGGATCACAGAGCTGAACCCACTTTCAAGCACACATACAGTAGGTATGGTACGGTTTAGTGCCCAAAATAACTATATGATTCTCGGAGGGACCAGAACCTTTCTATCCTTTACAAAAGGGATCATGTATATAAGGAGGACTGGAGGTTCAGCATGGAGGGACTTAATCCCAGACCAACACCCACCACCTCACCCTTTCCCGATGAACCAATGTACTCGAATAAGCACAAAACATTCCAAAGCTATAATCTCAGTTATATTCTTAGCTCTAACCTTTCTGTAAGGTTACCTCGTATAATGCACTTTTATGGGTGATTTTATAGTGCTGAAATAATTTTGAAGTGACCGTTTTTGTGTTCTGTTGTCCCAATAAAATTCAAATGAGGGAAGA
>XM_021624251.2
AATTTACCTCAGTCCAAAACCGGGGGAAAAGTTCATTGCAGCGCGGAACACGTTTAATTTTATACTGGAATGGCAATGGCAGAAATAATGTCCCCGGAATTGTCTCAgggacaaggacaaggacaagGAAAGCAGAACCAGCTCAACGACTTAGAATCAGATTCGGACCAAGAGGAAGATCATGCGGCGACCACCGGGACTGGACCGGCTGTTGCTGGCTCTTTTCTCCGCGCGCAGGTCATCCATAGCGGACACTTTATGGTGTCCTCCCCGCACAGCGACTGCACCCCGCGGAGACGGAAAAGCGGTGCTACGGTGCGATATGATTTCGATACGGTGAACAGGACTTGGTGTCAAACATACAGATTCGGTCCGCTAAGTTCTGGGAGCCTTAGCATCGACCCAACGCTGACCCGGTTATTTGAGTGTATGTCACTGGCTTACAGTGGTAAAATAGTCTCTCCGAAGTGGAAGTCTTTCAAAGGCCTGCGGCTGCTCTGGAGAGACAAAATCCGTCTGAATAATGGAATCTGGAGAGCCTGGTTCATCCAGTacgtggagaagaggaagaaccCTGTGTGTGGGTTCGTCACCCCACTGGAGGGCTCCGAGGCCGACGCCCATCGCAAACCTGAAGCTATAGTTCTAGAAGGCAGCTACTGGAAGCGTAGGATCGAGGTAGTGATCAAAGAATACCACAAGTGGAGGATCTACTACAAGAAGAGGCTTCAGAAAAACAAAGATGGCCTTTTGTCAATGCTACAGAAGGGTCAGATCTGCAGGGCGGAGCTGGAGAAATGGTCCAGTCAGATGTACCAGGAGCCTGAGGTCATGCCAGAGGAGGTCCACATGTTTGACCTGGACTGCTTTCTGTCCGACATCTCTGACACCCTGTTCACCATGACCCAAAAGCCCTGCCCGTGGGCCAACGACCGGCACAACACGTACACCAGCAATGCTGACATGATACAGCCAGGTCTCACCCCACTGCAGCCCAATCTAGATGACTTCATGGATATCCcagATATCTTTATGAGCTACCGGGGCCAGTCATTGGAGCAGGCTGCTTATGCTGACTGTGGCTACTTTGAGAGCTCCTCCAGCGGGGCTTTCCCCTCTGTGTCCAGCCCTGTGGTCACCGTTCCACAGCTACACGTCGACACTCAACTAGCTCAGTCCAACCTCTCATCTGACAGCCTGTCTCAGCCCTCTTCATCCAACTCTCTGTCAGGCCCTGGCTACCACAGACAACCCCTGACCTCTGAAATTACCTTCAACCCCACTAACAACCCCAAGTTCAAAGGTCACCAACAACAGGATTTCCACAGCGAGTACCATACTCCCAGCATGGTATCAGGGGCCATGCCCTCCTATGGACACCAGGCTTACTCCGGCGCCGCCGTCTCCATCGCAACCACCAACATACAACAGCAGCCCGTCTCCCCAGGAGACGGAACCTTTTTGTATCCGCCTCCCTGTCACAAGTACGGTTACCACGCCACCACTGCCAGCTCAGTGACCTCTACCGTCATCACCCACACGGGATCCACTATGGGTGGCAGTATTCTGGGATCGGATCCCCAGGGTCATCACGGGTACTCCACCACGGGAGACATGTACTCCCCAACATCCTGCCTCTCTCAGGGGTACTCGTCCGTGGTCTCGGCCCCGGCCCTGCCCTCTCTCAGTGTACCTCCTCACTGCTTCTCAGCCCCACAGCAGCCGGGTGTGGCAGGTGGTAGAAGGGGGAAGCACAAGCAGAAGACAGCAGTGGGGGTGCAGATGGGGTCCCGTCTGTCCACCCCTCAGACGGCTCCCCCCCAGACCAGCTTCCTGGCAAAACTACTGTCCTCCAGCACCCAAGAACGCAAACCAACGCTGGGATTCGATGCAACTTTAGTAGCAACCAAAGGGCACAGGTCAACCTCTCCCAACTCTCCACATTCGAGCAGCAGCATGCGTATCGGAGGAGTGTCTGGATCTCAGCTGCAGCCTGGGTCTCCCTGGCCCTCAGGGATCCCACTTCTTACACCAATTCACTGCCAGATGTCTACCCACAGCCACGCTGGTCTATACACTAGTACCTCCCACGGATCTGCCgtctctgctctcctcacccaGGGCTCAACACACCCCAACATACCTCTCCTCATCCCCAAGACAGAAAAACTCTCCCCCGTACAGATCTACGGTTCTGAGAGAACTAGTTTAACAGtgagCTTCTCGGGACACTCAGGGCAGATGTCCCCAACCAACCTTCTAGAGAGGGCATCCAACACTGAGTCTCCGCACTCCTTACCTGGACATTCCAAAATGGAGTCAAACAAGACAGAGACCAGGAGGATAACTCACATCTCTGCTGAGCAGAAGAGACGTTTCAACATCAAGCTAGGCTTTGATACTCTACACAGTCTCGTCACCACACTAAGCTCTCAGCCAAGTATAAAGGTCAGCAAGGCTACAACGCTACATAAGACAGTCGAGTACATAAGTAAGATGCAGCAGGAGAGATCTCAGCTACATGAGGAGGCTCAGAGACTCAGGGACGAAATTCTGCTCCTCAACTCTGCCATCAATGTATGCCAGCAGCAGCTGCCTGCCACCGGTGTGCCCATTACCCGTCAACGCTTCGaccacatgagggagaagttCAGAGAGTACGTCCGGGCGCAGACACTACAGAACTGGAAGTTTTGGATCTTCAGCATTATCATAGAGCCCTTGTTTGAGTCCTATAACGGGATGGTGTCCACAGCCAGTGTTGAGGATCTTTGTCGCACCACTCTGTCCTGGCTGGACCAGCACTGCTCTCTGCCTGCCCTCAGACCCATGGTCCTTAGTTCACTCCGTCTCCTGAGCACCTCCACGTCCATCCTGACAGACCCCAGCCTGGTGCCAGAGCAGGCCACCCAGGCGGTCACCCAGGCTAAGGGCCTCCCCCAGCCTCACCTCCCTGGCCAACCGCAGGACCACTGAGAGACCGTAGCCTGCTCCCCAAGCAAGCCACCCAGGTTGTCACCCAGGGCCTCCCCCACCCTACCCATCCCCAGGACCACTCCCCCTCCACGTGGCCCATTAACAGGGAAAACACACAGCCTATGTGACCCTATGGAACATTATAGTACCCTGTAACACAAAAGCCCAGTGACCCTACTAAACATTTTGAATACCGTAGATTGAAAACCAAACGGTGCCACTGGATCACAGAGCTGAACCCACTTTCAAGCACACATACAGTAGGTATGGTACGGTTTAGTGCCCAAAATAACTATATGATTCTCGGAGGGACCAGAACCTTTCTATCCTTTACAAAAGGGATCATGTATATAAGGAGGACTGGAGGTTCAGCATGGAGGGACTTAATCCCAGACCAACACCCACCACCTCACCCTTTCCCGATGAACCAATGTACTCGAATAAGCACAAAACATTCCAAAGCTATAATCTCAGTTATATTCTTAGCTCTAACCTTTCTGTAAGGTTACCTCGTATAATGCACTTTTATGGGTGATTTTATAGTGCTGAAATAATTTTGAAGTGACCGTTTTTGTGTTCTGTTGTCCCAATAAAATTCAAATGAGGGAAGA

Function

NR:

description
carbohydrate-responsive element-binding protein-like isoform X1

GO: NA

KEGG:

id description
K09113 MLX; MAX-like protein X

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021624252.2 False 3408 mRNA 0.53 17 57146515 57185366
XM_021624251.2 True 3587 mRNA 0.53 17 57146516 57185366

Neighbor

gene id symbol gene type direction distance location
LOC110537832 LOC106567406 coding upstream 14913 57126747 ~ 57131602 (+)
LOC110537831 dhx33 coding upstream 28350 57112902 ~ 57118165 (+)
camkk1a LOC106567408 coding upstream 112813 56913023 ~ 57033702 (+)
LOC110537826 LOC106567410 coding upstream 277405 56792616 ~ 56869110 (+)
zzef1 zzef1 coding upstream 432233 56663069 ~ 56719231 (+)
LOC110537834 srrm3 coding downstream 5609 57190975 ~ 57346018 (+)
hspb1 hspb1 coding downstream 165576 57350942 ~ 57357274 (+)
LOC110537838 LOC106567401 coding downstream 250966 57436332 ~ 57618352 (+)
LOC118937890 NA coding downstream 473139 57658505 ~ 57661561 (+)
LOC110537840 rnf43 coding downstream 476473 57661839 ~ 57836268 (+)
G1091475 NA non-coding upstream 390 57145899 ~ 57146125 (+)
G1091474 NA non-coding upstream 2500 57143721 ~ 57144015 (+)
G1091473 NA non-coding upstream 3448 57142784 ~ 57143067 (+)
G1091472 NA non-coding upstream 3880 57142384 ~ 57142635 (+)
G1091470 NA non-coding upstream 4804 57141509 ~ 57141711 (+)
G1091608 NA non-coding downstream 176691 57362057 ~ 57362272 (+)
G1091502 LOC100136198 non-coding downstream 177097 57362463 ~ 57367549 (+)
G1091764 NA non-coding downstream 454355 57639721 ~ 57640141 (+)
G1091769 NA non-coding downstream 463193 57648559 ~ 57648890 (+)
G1091771 NA non-coding downstream 465154 57650520 ~ 57651064 (+)
G1091235 NA other upstream 393568 56752418 ~ 56752947 (+)
G1091217 NA other upstream 420512 56725607 ~ 56726003 (+)
LOC110538908 LOC106603872 other upstream 2865794 54253719 ~ 54283905 (+)
G1087914 NA other upstream 2997553 54109690 ~ 54148962 (+)
LOC110537841 mtmr4 other downstream 714105 57893341 ~ 58071571 (+)
LOC118937686 NA other downstream 1030789 58216142 ~ 58222215 (+)
G1093909 NA other downstream 2356192 59541558 ~ 59542603 (+)
G1094218 LOC100380853 other downstream 2845637 60031003 ~ 60034020 (+)
G1095244 LOC108238713 other downstream 3200298 60385664 ~ 60385973 (+)

Expression


Co-expression Network