LOC110539079 (LOC106600700)


Basic Information

Item Value
gene id LOC110539079
gene name LOC106600700
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 60696612 ~ 60777061 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036937948.1
AAACATCTTGAGGTTGCTCGGTGTGACAGGTTGTGGGCGGAGCGCTGCGCAGCTCGAGTTGACCATTCCGAATAGTTTTACATCGCTGTGTCCACCCCATACAGAACCAGTGTCCGCTTGCGGTGCACTTCCAGCGGTCAACTTCAAACTATTTGTTTTGCGGTTTCGGACCTATTCGAAAATTGTTTTATTCCCTTGCCAGAGAAGAGGCGAGAGGGAGGGGTATAGAGTGCACCATGAAGGATACGGATAAAAGGCATGAAGGAGGCGGAAGGAGAACGGGAACAGAAAAATCAGAGAAAGATCAGAGCTGGATCCCCAAGATCATCAAAAAGAGAGTTTGCACCACGTTCGTAGAGGACTCATTAAGcAATGGGGTGTTGTGTCAGTGTGGTGGTGTGCGGGAGACACACTGCTCCATCGCTACAGGAGACTTCTTCGGGGCGGCCATCGTCAGCCAGTGGGACAGCTCTCAGCACTCCTCAGAGTACCCCACCGACGCCTTCGGCGAGTTGGAGTTCGCAGGGGCCGGCAGGAGACACAGCCATTTCCTGCGTTTGTCATGCGACACCCCACCTCATATCATGTACAGCCTGATGACGGCCCATTGGGGGGTGCCCTCCCCTAACCTGGTGGTTTCTGTGGTGGGTGGTCGCGAGAAGGTCAAGCCCTGGGTCAGGGAAGTGCTGAGACAGGGGCTGGTCAGGGCGGCACAGAgcacagggGCGTGGATAGTGACGGGGGGGCTGAGGGAGGGGGTGGGACGTTGTGTTGGGGAAGCAGTGAGGGATCATGCGGCGGCGGCCTCCTCCCTGTCCCAGAAGAAAGTCATCGCTGTGGGCGTGGCCCCCTGGGGCCTCGTGCACAACAGACAGTGGCTCGTCAACTCTGAGggTAGTTTTCCAGCACGGTATTATGTCCAGAACACGTCCCATGACTCGTGCTGCCTGGATAGTAACTACCAGGCCTTCCTGCTGGTGGATGATGGGAGTGTAGGCCGGCGGGGAGGGGAAACGGCCTTCCGGGCCAAGATGGAGGACTACATCTCCCACCAGCGCACAGGCATCTGGGGCAGTGGCAGTATAGATGTCCCTGTATTGTGTATGCTCATCTCAGGGGACGCTGCCATGCTGGAGaggGTGGATCTCTCTCTGAAGAAGGCTACTCCCTGGCTGGTGTTGAATGGTTCTGGTCCAGCGGCGGACCTCATCTGTGAGCTGCTGGATGCACTGTCAGCCGGGCCCATGAGCCCCCCCTCTCCCCAGTCAGAGGCTGAGGGGAGCGAGAAGACCAGTGCGGAGCTGCGCGACAGGGCCCGTGAGAGGGTCCGGAGACACTTCCCTGCCAAGGCAGACCTGGAGAAGCTTGTGgacaggGCTCTGAGTATCTATAAAAACAGAGATCTGATCACAGTGTTCCACGGGGAGCAGGAGAGTTCTGATGATTTTGACACAGTGCTACTGAAGGCTCTTGTCAGAGCCAGTAAACGTGTGTCCAGCGATGCCAGTGAGTACACAGAGGAGCTGAAGCTAGCAGTAGCCTGGAACAGGGTGGACATCGCTAAGAGTGAACTCTTCAACGGAGACATCCAATGGAAGTACGAGGACCTGGAGGACTCCATGACAGATGCGCTGATCAACGACAAGCCCCAGTTTATACGTCTCTTCAACGAGAACGGCCTCAACATCCTGGACTACCTAACCTACAGGCATCTGGAGGTCCTGTACCGCTCGCTGTCCGACAGTTCTCTGGCCTTCACTCTGCTCCAGCGGCTTCTCACAGAGAGACAGGGCCTGGCCATATGCTCTCCGAAAGAGGCCTTAGCCCTCAAGAGCCCCCAGAACCCCATGAGCCCCCTATCAGGACCCTCCTCTGTCAAAGAGCTCAGCTTGTATGAGgtgtcacGGCTTTTATGGGACATCCTGGGAGATGTGTGTGAGCCCTTCTACTACAGTCTTCTCGGTTTGGACCAGAGCGCCAGCACCAGGAGAGCACTGAAGCAAGTTAATAAGTTGTTGCAAGGGGATTGTTCATACAGGGAGCAGAGCTGTCTCTATCCGTGGGCCTCTCTGTTCATCTGGGCTGTGCTGCAGAACCGCAGTGAGATGGCCATCTACTTCTGGGAGATGgcaGGGGAGTCTGTCCACAGTGCTCTGGCAGGCTGTAAGATTCTGAGGGAGCTGTCTAAGctggagagtgagacagagaccaAGCTCTCtatgaaggagctggcccagaaGTTTGAGAACTTGGCCCTTGACGTGTTCAGTGAGTGCTACCAGAGCAGTGAGAGTCGCTCTTTCACCCTCCTTATAAGGCAGTCTCCGGTGTGGGGCAAAGCTACCTGTCTACAGATGGCCACCTCAGCCGACGCCCGCCACTTCTTCAGCCATGATGGCGTGCAGtctctgctGTCTCAGATCTGGTGGGGAGACATGAAGAGGAGCACGAAGGTCTGGAAactggtcctctccttcttcttacCCCCCCTCATCTACACCAACCTCATCAGCTtcagggaacATGAGGAAGAGGTGAGGTCGGAGGAGGTACCTCTTGGTCGAGACACAGAGAGTCTGGACGGAGGAGATGCCACTATGCTCTCCCTCTCCGACATCATGCAAACGGAAGAGGATGTCGAGGAATATGCTGCTCTAAGGGACAATCTGAAAAGTGCCCCCTCCTCCAATCCCAAGAGGCCCTTCGTATTGCTGCGCTGGAGGGAGTTCTGGTTTGCGCCTGTCACCTCGTTCCTAGGCAACGTGCTGATGTACTTCCTGTTCCTCATCCTGTTTGCTTATATCCTATTGTTGGACTTCAAGCCCCCGCCGCCTCACGGCCCGTCCACCTTAGAGTTTGTTCTATACTTCTGGGTCTTCACCATGGTCTGTGAGGAGATTCGACAGacaTTCTTCAGGGGCAACACCACTTTATATCAGAGAATGAAGCTCTACATCGAGGACATGTGGAATAagtgtgacatcacagccatCTCACTCTTTGCACTGGGAATGTGCTGCAGAATGTTCCCGTGGTCCTATGAGTTTGGCCGTGCTGTGTTGGCTGTGGACTACATGGTGTTTACCCTCCGTCTCATCCACATCTTTGCCATCCACAAACAGCTGGGACCCAAGATAATCATTGTTGAAAAAATGATGAAAGACATCTTCTTCTTCCTGTTCTTCCTGGCGGTGTGGCTCCTGGCCTACGGTGTAGCCAATCAGGCGCTGCTCTACTCCTACGACCCCCGTCCCGGTTGGATCTTTCGCAGAGTGTTCTACAGGCCATACCTACACATATTTGGACAGATCCCCATACACGAAATGGATGCTGATAAACTGGATGAGGGGATAGAGTGCACCAATAACGCCACTCTGGTCGAGGCGGGGGCAGAGCCCTGCATGAGTACCGACCACAATTGGCTGGTGGTCATCTTATTGGTCATCTTCCTGCTGGTCACCAACATCCTCCTGGTCAACCTGCTCATCGCCATGTTCAGTCACACGTTCTCCAAAGTGCAGGAGCACAGCGACAACTACTGGAAGTTCCAGCGCTACAATCTGATCGTGGAGTATCACTCCAGACCCTGCCTGGCACCACCCTTCATCCTCatctcccacctccacctcttcaTCAAGAGACACATCCGCAAGATCCCCTCCACGAAGATCAAACACtttgTTCTGGAGATCCATGGTAGGGAGGCCAGTAGACTGAACACGTGGGAGGCCATCCAGAAGGAGAATATACTCTTTGCCCAGaacaaacgagagagagagaaagactcagAGAGACTCAAACGCACCTCCGTCAAGGTGGACAATGTATTAAAGCAGATGGCAGAGATTCGGGACCACGACCGCAGGCTGAGAATGTTGGAAACCGAGttggagtactgttctagtgccctctccTGGATGACGGAGGCTCTCTCTCAGAGTAACTTGGTAAAGACCACACGTCCTCCGCCCGCTCTCAGAGatctgacctctctctctccaactagcTGACAAATGTCTGATGGAGAATAGTGAAATCTGGACGCGCACACACGACCTCTTAGTTGTCCCTCAAAGTCGATGATGACAAATGTTCCTCTTGTGGATTGGGGATATcactttaaacacacacacacacacacacacacacactcaaacctaGAATCACTGTCACTCAGGGccagtggtgtgaagtacttaagtaaaaatactttaaagtactaagtggtttttgggggtatctgtactttactttactatttatatttttggcaacttttactcttacttcactgcattcctaaagaaaatgatattatttttactcaatacatttccctgacacccaaacgtACTCGTTACATGTTGAgtgcttagcaggacaagaaaattgtcaaattcacacacttatcaagagaacatcccttgtcatccctactgcctctattCTGACGGACTCAccaaacacatgctttgtttgtaaattatgtctgagagtGGGAGCGTAAAATAAACAGGACAATAATGCCGTTTGGggtgcttaatataaggaatttgaaatgatttatacttttacttttatagtatattttagcaattacatttacttttgatacttaagtatatttcaaaccaaatacttttagacttttactcaagtagtattttactgggggactttcacttttacttgaatcattttgtgttaaggtatctttactttcactcaagtatgtcaattgggtactttttccaccactgctcagGGCCAAGGAATGTCAAGCAATGTCAAACACGGACTCGATGCTCTTTCATCCATCCTTTCAATGTCGTTTTTTAGCGTTGATCATTTGAACTACTGTCATTTAATATGTGGACCATTGTTGCTCTTCTATGTTATACTTTGTTGTTCCTATGTTCTATAAATCTTGTTCCTGTGGGTTATAGAATGTGAGGAGAACAGGACAATCTGTTCTTCATGTAATATGTATAGACATTTTTAAAAGGTGTATTCAACCTGACACAATCACAAAAATGTTGGTttgcagtcaatgaccaaaagcgCCCTCTTTGGGCGCATggtattaatatttttcataatttcataattaataaagattaaaacatacaacaaaaA
>TU1245572
TTTTACATCGCTGTGTCCACCCCATACAGAACCAGTGTCCGCTTGCGGTGCACTTCCAGCGGTCAACTTCAAACTATTTGTTTTGCGGTTTCGGACCTATTCGAAAATTGTTTTATTCCCTTGCCAGAGAAGAGGCGAGAGGGAGGGGTATAGAGTGCACCATGAAGGATACGGATAAAAGGCATGAAGGAGGCGGAAGGAGAACGGGAACAGAAAAATCAGAGAAAGATCAGAGCTGGATCCCCAAGATCATCAAAAAGAGAGTTTGCACCACGTTCGTAGAGGACTCATTAAGcAATGGGGTGTTGTGTCAGTGTGGTGGTGTGCGGGAGACACACTGCTCCATCGCTACAGGAGACTTCTTCGGGGCGGCCATCGTCAGCCAGTGGGACAGCTCTCAGCACTCCTCAGAGTACCCCACCGACGCCTTCGGCGAGTTGGAGTTCGCAGGGGCCGGCAGGAGACACAGCCATTTCCTGCGTTTGTCATGCGACACCCCACCTCATATCATGTACAGCCTGATGACGGCCCATTGGGGGGTGCCCTCCCCTAACCTGGTGGTTTCTGTGGTGGGTGGTCGCGAGAAGGTCAAGCCCTGGGTCAGGGAAGTGCTGAGACAGGGGCTGGTCAGGGCGGCA

Function

NR:

description
transient receptor potential cation channel subfamily M member 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036937948.1 False 5136 mRNA 0.50 27 60696612 60777061
TU1245572 True 638 TUCP 0.55 4 60696687 60714012

Neighbor

gene id symbol gene type direction distance location
trpm4a LOC106600700 coding upstream 8497 60625595 ~ 60688115 (+)
scaf1 scaf1 coding upstream 100391 60576961 ~ 60596221 (+)
prr12b prr12 coding upstream 152583 60513247 ~ 60544029 (+)
prrg2 prrg2 coding upstream 185312 60501702 ~ 60511300 (+)
LOC110537905 LOC106583918 coding upstream 196119 60482890 ~ 60500493 (+)
LOC110539110 LOC106600715 coding downstream 21180 60798241 ~ 60805113 (+)
LOC110539099 nosip coding downstream 31918 60808979 ~ 60813429 (+)
LOC110538924 LOC106600724 coding downstream 50383 60827444 ~ 60832100 (+)
LOC118937692 NA coding downstream 65630 60842691 ~ 60844148 (+)
bcl2l12 bcl2l12 coding downstream 109010 60886071 ~ 60893424 (+)
G1095340 NA non-coding upstream 119958 60576422 ~ 60576654 (+)
G1095335 NA non-coding upstream 126767 60569605 ~ 60569845 (+)
G1095333 NA non-coding upstream 128260 60568081 ~ 60568352 (+)
G1095332 NA non-coding upstream 128544 60567838 ~ 60568068 (+)
G1095329 NA non-coding upstream 130367 60566017 ~ 60566245 (+)
G1095413 NA non-coding downstream 2202 60779263 ~ 60779496 (+)
G1095438 NA non-coding downstream 47656 60824717 ~ 60824999 (+)
G1095440 NA non-coding downstream 57213 60834274 ~ 60834565 (+)
G1095449 NA non-coding downstream 75383 60852444 ~ 60854828 (+)
G1095460 NA non-coding downstream 129278 60906339 ~ 60911659 (+)
G1095244 LOC108238713 other upstream 310639 60385664 ~ 60385973 (+)
G1094218 LOC100380853 other upstream 662592 60031003 ~ 60034020 (+)
G1093909 NA other upstream 1154009 59541558 ~ 59542603 (+)
LOC118937686 NA other upstream 2474422 58216142 ~ 58222215 (+)
LOC110537841 mtmr4 other upstream 2781780 57893341 ~ 58071571 (+)
G1095209 NA other downstream 39430 60816491 ~ 60818897 (+)
mmp25a LOC106600705 other downstream 177639 60931123 ~ 60965921 (+)
G1095540 NA other downstream 260678 61037739 ~ 61352345 (+)
LOC118937701 LOC100136295 other downstream 1669443 62441706 ~ 62448515 (+)
LOC100305204 hebp2 other downstream 2525430 63302491 ~ 63334694 (+)

Expression


Co-expression Network