G1095540


Basic Information

Item Value
gene id G1095540
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 61037739 ~ 61352345 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1245933
TGGTTGGATACTGACAGGAAAAGCTATGGGTTTTTGGGGACTACTGTCTGTAATTTTGCTGGTCCAAGATGCTGCAGAGTCGTTTGTGCCCCAGGCTCGGAGCTCTATCGTGGGGGAAAGGATGCTCAAAAGGGCCGCTGGCCGTGGATAGTCTACCTTTTAATCACGGATAATACAGGCTCCTTTAGCTGTGGCGGATCCCTCCTTACTGAGGAATGGGTGCTCACCGCTGCACACTGTGTTGACCcGAATGACAACCCTATTCCAGACCGTTCCTCCATTCGTCTGGGGACACACAGCCTGAATGAGCCATCAGTGTTTTATCGATCCATCTCACGCATCGTCAGTCACCCACAGTACCAGAAACAGCATTTGGCCCTGCTGCACGACATCGCTTTGGTGAAGATGAGTAAAAAGGTGTCCTTTTCCTCCCTGGTGAAGCCCATGTACCTGCCCAAACCGAGTGATGCCTTTGGCCCAAGGTCGAAGTGCTTCATCGCTGGCTGGGGCGATGTCGGGAACAATGTGGAATTGTCTGGTAATATGACCCTCCAGGAGCTGAAGTTGCCCATCGTGAAACAGTCGTGAAAAAGTTTCCGGGCCTCACTGACAACATGCTGTGTGCTGGCTCCATAAAAGGGAAAGGCTCCTGTCTGGGGGACTCTGGTGGGCCGTTGGTTTGTCGCTCATCTGGTGAGATTGTCCAGGTGGGAATCGTGAGTTTTGGGAATAAGAATGGCTGTGCTTTGAAGGCTTCCCTGAAGTCTACACCCGTGTGAAACGCTACATGGACTTCATCAGCGAGACTATAACCTCAGACAGACAGGCTTCTGCTGAGGCCTAGGTCACCATGAAACACTGTCTGTTTACAGTCCATatccccctctcgctctgtcttccCTTTCTCTTCAGTTCCCTATTGAGCCAAAGTCCTTACTTGAGATGCAGCTGGAAGTGATTTAAAATGACAAGATATTGGTATTGATTGTGAATTACTTTGTGGTTTTATTCTTTACCAGACCTTTAAATTATTTTCCAATATATTTCGAAGTATTTAGTCAACTCTTCCTTGAAAATACAAGATGTTGAATATTTATTTGAAATATTTAAGTACTCTATGCATTTGAAACCAGGTCTGTTTGAACACAGGGGTatttgtacatgatttggaaacaaGTAATTGAAAATAGTTTAAAATATAATGTATAGAAAATGATTAGAAAATATACAGAAAATACAT
>TU1245937
TGGTTGGATACTGACAGGAAAAGCTATGGGTTTTTGGGGACTACTGTCTGTAATTTTGCTGGTCCAAGATGCTGCAGAGTCGTTTGTGCCCCAGGCTCGGAGCTCTATCGTGGGGGAAAGGATGCTCAAAAGGGCCGCTGGCCGTGGATAGTCTACCTTTTAATCACGGATAATACAGGCTCCTTTAGCTGTGGCGGATCCCTCCTTACTGAGGAATGGGTGCTCACCGCTGCACACTGTGTTGACCcGAATGACAACCCTATTCCAGACCGTTCCTCCATTCGTCTGGGGACACACAGCCTGAATGAGCCATCAGTGTTTTATCGATCCATCTCACGCATCGTCAGTCACCCACAGTACCAGAAACAGCATTTGGCCCTGCTGCACGACATCGCTTTGGTGAAGATGAGTAAAAAGGTGTCCTTTTCCTCCCTGGTGAAGCCCATGTACCTGCCCAAACCGAGTGATGCCTTTGGCCCAAGGTCGAAGTGCTTCATCGCTGGCTGGGGCGATGTCGGGAACAATGTGGAATTGTCTGGTAATAGGACCCTCCAGGAGCTGAAGTTGCCCATCGTGAAACAGAGCACCTGTAAGAAAAAGTTTCCGGGCCTCACTGTCAACATGCTGTGTGCTGGCTCCATAAAAGGGAAAGACTCCTGTCTGGGGGACTCTGGTGGGCCGTTGGT

Function

NR:

description
tryptase-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1245933 False 1240 lncRNA 0.45 5 61037739 61041781
TU1245937 True 686 TUCP 0.53 6 61037739 61352345

Neighbor

gene id symbol gene type direction distance location
mmp25a LOC106600705 coding upstream 71818 60931123 ~ 60965921 (+)
bcl2l12 bcl2l12 coding upstream 144315 60886071 ~ 60893424 (+)
LOC118937692 NA coding upstream 193591 60842691 ~ 60844148 (+)
LOC110538924 LOC106600724 coding upstream 205639 60827444 ~ 60832100 (+)
LOC110539099 nosip coding upstream 224310 60808979 ~ 60813429 (+)
LOC118937694 NA coding downstream 37787 61079568 ~ 61079848 (+)
LOC118937693 NA coding downstream 54010 61095791 ~ 61097619 (+)
LOC110539103 NA coding downstream 74917 61116698 ~ 61126203 (+)
LOC118937695 NA coding downstream 122052 61163833 ~ 61164098 (+)
LOC118936507 cln3 coding downstream 137113 61178894 ~ 61181776 (+)
G1095506 NA non-coding upstream 46701 60990649 ~ 60991038 (+)
G1095509 NA non-coding upstream 63894 60973299 ~ 60973845 (+)
G1095504 NA non-coding upstream 64546 60971791 ~ 60973193 (+)
G1095501 NA non-coding upstream 71231 60966225 ~ 60966508 (+)
G1095493 NA non-coding upstream 87062 60950108 ~ 60950677 (+)
G1095574 NA non-coding downstream 147975 61189756 ~ 61190136 (+)
LOC110538925 cln3 non-coding downstream 232109 61258812 ~ 61285193 (+)
G1095617 NA non-coding downstream 316236 61358017 ~ 61358849 (+)
G1095615 aldoa non-coding downstream 317755 61359536 ~ 61363938 (+)
G1095209 NA other upstream 218842 60816491 ~ 60818897 (+)
LOC110539079 LOC106600700 other upstream 323727 60696612 ~ 60777061 (+)
G1095244 LOC108238713 other upstream 651766 60385664 ~ 60385973 (+)
G1094218 LOC100380853 other upstream 1003719 60031003 ~ 60034020 (+)
LOC118937701 LOC100136295 other downstream 1404723 62441706 ~ 62448515 (+)
LOC100305204 hebp2 other downstream 2260710 63302491 ~ 63334694 (+)
LOC110538933 LOC106600901 other downstream 2846315 63888086 ~ 63908673 (+)
G1097063 NA other downstream 3094577 64136358 ~ 64136704 (+)
G1097116 NA other downstream 3186220 64228001 ~ 64228684 (+)
LOC110539107 LOC106600721 coding downstream 172353 61524698 ~ 61530938 (+)
LOC110539080 LOC106600701 coding downstream 235218 61587563 ~ 61596487 (+)
nudt9 nudt9 coding downstream 322382 61674727 ~ 61682763 (+)
LOC110537909 ehd3 coding downstream 330622 61682967 ~ 61699122 (+)
atp2a1 atp2a1 coding downstream 372423 61724768 ~ 61753320 (+)
G1095653 NA non-coding downstream 27880 61380225 ~ 61380439 (+)
G1095657 NA non-coding downstream 37716 61390061 ~ 61390342 (+)
G1095665 NA non-coding downstream 51276 61403621 ~ 61444941 (+)

Expression


Co-expression Network