LOC110539103


Basic Information

Item Value
gene id LOC110539103
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 61116698 ~ 61126203 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021626079.2
ATCAAACAGCCGTCTGGTTGGTTGGATACTGACAGGAAAAGCTATGGGTTTTTGGGGACTACTGTCTGTAATTTTGCTGGTCCAAGATGCTGCAGaaTCGTTTGTGCCCCAGGCTCGGAGCTCTATCGCGGGGGGAAAGGATGCTCAAAAGGGCAGCTGGCCGTGGATAGTCTACCTTTTAATCACGGATAATACAGGCTCCTTTAGCTGTGGCGGATCCCTCCTTACTGAGGAATGGGTGCTCACCGCTGCACACTGTGTTGACCcGAATGACAACCCTATTCCAGACAATTCCTTCATTCGTCTGGGGACACACAGCCTGAATGAGCCATCAGTGTTTTATCGAACCATCTCACGCATCGTCAGTCACCCACAGTACCAGCGTTTTGCCCTGCTGCACGACATCGCTTTGGTGAAGATGAGAGAAAAGGTGTCCTTTTCCTCTCTGGTGAAGCCCATGTCCCTGCCCAAACCGAGTGATAACTTTGGCCCAGGGTCGAAGTGCTTCGTCGCTGGCTGGGGCGATGTCGGGAACAATGTGAAATTGTCTGGTAATAGGACCCTCCAGGAGCTGAAGTTGCCCATCGTGAAACGAAGCACCTGTAAGAAAAAGTTTCCGGACCTCACTGACAACATGCTGTGTGCTGGCTCCATAAAAGGGAAAGACTCCTGTCTGGGGGACTCTGGTGGGCCGTTGGTTTGTCCCTCATCTGGTGTGTTGGTCCAGGTGGGAATCGTGAGTTTTGGGGATATCAATGGCTGTGCTTTGAAAGGCTTCCCTGGAGTCTACACCCGTGTGAAACGCTACATGGACTTCATCAGCGAGACTATAACCTCAGACAGACAGGCTTCTGCTGAGGCCTAGGTCACCATGAAACACTGTCTGTTTTACAGTCCATatccccctctcgctctgtcttccCTTTCTCTTCAGTTCCCTATTGAGCCAAAGTCCTTACTTGAGATGCAGCTGGAAGTGATTTAAAATGACAAGATATTGGTATTGATTGTGAATTACTTTGTGGTTTTATTCTTTACCAGACCTTTAAATTATTTTCCAATATATTTCGAAGTATTTAGTCAACTCTTCCTTGAAAATACAAGAtgttgaatctgtatttgaaatatttattTGAAATATTTAAGTACTCTATGCATTTGAAACCAGGTCTGTTTGAACACAGGGGTatttgtacatgatttggaaacaaGTAATTGAAAATAGTTTAAAATATAATGTATAGAAAATGATTAGAAAATATACAGAAAATACATCtttaaaatataaatactttaataaacatgtatttgaacccaggtctgttgtaaaaaaaaaaatgttcaatGACTTACTGGCTATGTCCTTTTCAATAGTAGCTCCTTAGTAAACTGCAAGCATCAACCCTTc

Function

NR:

description
tryptase-2-like

GO: NA

KEGG:

id description
K01340 E3.4.21.59; tryptase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021626079.2 True 1408 mRNA 0.44 5 61116698 61126203

Neighbor

gene id symbol gene type direction distance location
LOC118937693 NA coding upstream 19079 61095791 ~ 61097619 (+)
LOC118937694 NA coding upstream 36850 61079568 ~ 61079848 (+)
LOC110539100 NA coding upstream 74789 61037724 ~ 61041909 (+)
mmp25a LOC106600705 coding upstream 150777 60931123 ~ 60965921 (+)
bcl2l12 bcl2l12 coding upstream 223274 60886071 ~ 60893424 (+)
LOC118937695 NA coding downstream 37630 61163833 ~ 61164098 (+)
LOC118936507 cln3 coding downstream 52691 61178894 ~ 61181776 (+)
LOC118936506 NA coding downstream 74712 61200915 ~ 61210481 (+)
LOC110538925 cln3 coding downstream 132609 61258812 ~ 61285193 (+)
LOC110539102 NA coding downstream 190852 61317055 ~ 61325155 (+)
G1095540 NA non-coding upstream 74917 61037739 ~ 61352345 (+)
G1095506 NA non-coding upstream 125660 60990649 ~ 60991038 (+)
G1095509 NA non-coding upstream 142853 60973299 ~ 60973845 (+)
G1095504 NA non-coding upstream 143505 60971791 ~ 60973193 (+)
G1095574 NA non-coding downstream 63553 61189756 ~ 61190136 (+)
G1095617 NA non-coding downstream 231814 61358017 ~ 61358849 (+)
G1095615 aldoa non-coding downstream 233333 61359536 ~ 61363938 (+)
G1095653 NA non-coding downstream 254022 61380225 ~ 61380439 (+)
G1095209 NA other upstream 297801 60816491 ~ 60818897 (+)
LOC110539079 LOC106600700 other upstream 402686 60696612 ~ 60777061 (+)
G1095244 LOC108238713 other upstream 730725 60385664 ~ 60385973 (+)
G1094218 LOC100380853 other upstream 1082678 60031003 ~ 60034020 (+)
LOC118937701 LOC100136295 other downstream 1320301 62441706 ~ 62448515 (+)
LOC100305204 hebp2 other downstream 2176288 63302491 ~ 63334694 (+)
LOC110538933 LOC106600901 other downstream 2761893 63888086 ~ 63908673 (+)
G1097063 NA other downstream 3010155 64136358 ~ 64136704 (+)
G1097116 NA other downstream 3101798 64228001 ~ 64228684 (+)

Expression


Co-expression Network