LOC110539102


Basic Information

Item Value
gene id LOC110539102
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 61317055 ~ 61325155 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021626078.2
CAAACAGCCGTCTGGTTGGTTGGATACTGACAGGAAAAGCTATGGGTTTTTGGggcctactgtctgtaattttGCTGGTCCAAGATGCTGCAGaaTCGTTTGTGCCCCAGGCTCGGAGCTCTATCGTGGGGGGAAAGGATGCTCAAAAGGGCAGCTGGCCGTGGATAGTCTACCTTTTAATCACTGATGATACAGGCATCTTTAGCTGTGGCGGATCCCTCCTTACTGAGGAATGGGTGCTCACCGCTGCACACTGTGTTGACCcGAATGACAACCCTATTCCAGACAATTCCTTCATTCGTCTGGGGACACACAGCCTGAATGAGCCATCAGTGTTTTATCGAACCATCTCACGCATCGTCAGTCACCCACAGTACCAGCCTTTTGACCTGCTGCATGACATCGCTTTGGTGAAGATGAGAGAAAAGGTGTCCTTTTCCTCCCTGGTGAAGCCCATGTCCCTGCCCAAACCGAGTGATAACTTTGGCCCAGGGTCGAAGTGCTTCGTCGCTGGCTGGGGCGATGTCGGGAACAATGTGGAATTGTCTGGTAATAGGACCCTCCAGGAGCTGAAGTTGCCCATCGTGAAACAGAGCACCTGTAAGAAAAAGTTTCCGGGCCTCACTGTCAACATGCTGTGTGCTGGCTCCATAAAAGGGAAAGACTCCTGTCTGGGGGACTCTGGTGGGCCGTTGGTTTGTCCCTCATCTGGTGTGTTGGTCCAGGTGGGAATCGTGAGTTTTGGGGATATCAAGGGCTGTGCTTTGAAAGGCTTCCCTGGAGTCTACACCCGTGTGAAACGCTACATGGACTTCATCAGCGAGACTATAACCTCAGACAGACAGGCTTCTGCTGAGGCCTAGGTCTCCATGAAACACTGTCTGTTTACAGTCCATatccccctctcgctctgtcttccCTTTCTCTTCAGTTCCCTATTGAGCCAAAGTCCTTACTTGAGATGCAGATGGAAGTGATTTAAAATGACAAGATATTGGTATTGATTGTGAATTACTTTGTGGTTTTATTCTTTACCAGACCTTTAAATTATTTTCCAATATATTTCGAAGTATTTAGTCAACTCTTCCTTGAAAATACAAGAtgttgaatctgtatttgaaatatttattTGAAATATTTAAGTACTCTATGCATTTGAAACCAGGTCTGTTTGAACACAGGGGTATTTGTAAATGATTTGGAAACAAGTAATTGAAAATAGTTTAAAATATAGTGTATAGAAAATGATTAGAAAATATACAGAAAATACATCtttaaaatataaatactttaatgaacatgtatttgaacccaggtctgttgtaaaaaaaaaaaatgttcaatGACTTACTGGCTATGTCCTTTTCAATAGTAGCTCCTTAGTAAACTGCAAGCATCAACCCTTCCGTTTCAGTTTTTTTGTGTGAGAGTGTCACAAAA

Function

NR:

description
tryptase-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021626078.2 True 1440 mRNA 0.44 5 61317055 61325155

Neighbor

gene id symbol gene type direction distance location
LOC110538925 cln3 coding upstream 31862 61258812 ~ 61285193 (+)
LOC118936506 NA coding upstream 106574 61200915 ~ 61210481 (+)
LOC118936507 cln3 coding upstream 135279 61178894 ~ 61181776 (+)
LOC118937695 NA coding upstream 152957 61163833 ~ 61164098 (+)
LOC110539103 NA coding upstream 190852 61116698 ~ 61126203 (+)
LOC110539107 LOC106600721 coding downstream 199543 61524698 ~ 61530938 (+)
LOC110539080 LOC106600701 coding downstream 262408 61587563 ~ 61596487 (+)
nudt9 nudt9 coding downstream 349572 61674727 ~ 61682763 (+)
LOC110537909 ehd3 coding downstream 357812 61682967 ~ 61699122 (+)
atp2a1 atp2a1 coding downstream 399613 61724768 ~ 61753320 (+)
G1095574 NA non-coding upstream 126919 61189756 ~ 61190136 (+)
LOC118937693 NA non-coding upstream 219458 61095791 ~ 61097619 (+)
G1095540 NA non-coding upstream 275274 61037739 ~ 61352345 (+)
G1095506 NA non-coding upstream 326017 60990649 ~ 60991038 (+)
G1095617 NA non-coding downstream 32862 61358017 ~ 61358849 (+)
G1095615 aldoa non-coding downstream 34381 61359536 ~ 61363938 (+)
G1095653 NA non-coding downstream 55070 61380225 ~ 61380439 (+)
G1095657 NA non-coding downstream 64906 61390061 ~ 61390342 (+)
G1095665 NA non-coding downstream 78466 61403621 ~ 61444941 (+)
mmp25a LOC106600705 other upstream 351460 60931123 ~ 60965921 (+)
G1095209 NA other upstream 498158 60816491 ~ 60818897 (+)
LOC110539079 LOC106600700 other upstream 603043 60696612 ~ 60777061 (+)
G1095244 LOC108238713 other upstream 931082 60385664 ~ 60385973 (+)
G1094218 LOC100380853 other upstream 1283035 60031003 ~ 60034020 (+)
LOC118937701 LOC100136295 other downstream 1121349 62441706 ~ 62448515 (+)
LOC100305204 hebp2 other downstream 1977336 63302491 ~ 63334694 (+)
LOC110538933 LOC106600901 other downstream 2562941 63888086 ~ 63908673 (+)
G1097063 NA other downstream 2811203 64136358 ~ 64136704 (+)
G1097116 NA other downstream 2902846 64228001 ~ 64228684 (+)

Expression


Co-expression Network