XLOC_029951 (htr7c)


Basic Information

Item Value
gene id XLOC_029951
gene name htr7c
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 16496273 ~ 16581486 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058653
ATGATGTTCAACTCCTCGCTTGATTTCTTCTCGTTCACTCACCCCGAGGTCGCGTCGGAAGTTCTCAATGGTTCCTCACACTTCTTCTACAACATCTCGATGGCCATGTGGAACAAATCCTGCGGGGAGCAGCTGCTGGACTTCACCGCGGCGGAGAAGATCGTCATCGGCTTGATGCTGGCCATCATCACCACCGTGACGGTGATTGGGAATATGCTGGTGGTTATCGCCGTGTGCGTGGTCAAGAAGCTCCGACAGCCCTCCAACTATCTGCTTGTGTCCCTGGCCGTGGCCGATCTCTCCGTGGCCATCGTGGTGATGCCGTTTGTGATCGTGACCGACCTGACCGGGGGAAAGTGGCTGTTTGGAGAGGTCTTCTGCAATATCTTCATCGGCATGGATGTGATGTGCTGCACCGCGTCCATCATGACGCTGTGCGTGATCAGTGTGGACAGATACCTTGGCATCACCCGCCCTTTGACCTACCCTGCTCGTCAAAATGGTCAACTTATGGCCAAGATGATCTTTGGCGTGTGGCTGGTGTCTGCCTCCATCACGCTTCCGCCATTTTGCGGCTGGGCGAAGAACGTCAACACGGCTGGCGTCTGTCTGATCAGCCAGGACTTCGGCTACACCATCTACTCCACTGCTGTGGCCTTCTACATCCCCATGATCGTCATGCTCTTCATGTACTACAAGATCTTCAAAGCTGCCAGAAAAAGCGGCGCCAAGCATCGATTCACCGACTTCTCCCGCAGGGAACGACTTGAAACCGTCGCCAGCGAAGCTCTGAGGATGCAAGGCCTAAAACCTCAACACACGCCTGGAGTAGCAGAGGAGTGCGCCGCTCTTTCTCGATTGCTCAGCCGCGAACGACAGAACATCTCCATATTTAAGAGGGAGCAGAAAGCAGCGACCACACTTGGAGTGATAGTTGGAGTTTTTGGGATTTGCTGGCTGCCGTTTTTCATTCTTTCTACAGCGAGACCGTTCATTTGTGGGGTCAAGTGTAGTTGCATACCGATCTGGCTGGAGAGGACGCTGTTGTGGTTTGGATATGCAAATTCATTAATGAACCCCTTCATTTATGCTTTTTTCAATCGGGACCTGCGATCCACCTACAGAGACTTGCTACGTTGCAGATACCGGAATATAAACCGCCGACTGTCGGCTGTTGGTGTGCATGAGGCActgaaggtttaa
>TCONS_00058654
TGCGGGGAGCAGCTGCTGGACTTCACCGCGGCGGAGAAGATCGTCATCGGCTTGATGCTGGCCATCATCACCACCGTGACGGTGATTGGGAATATGCTGGTGGTTATCGCCGTGTGCGTGGTCAAGAAGCTCCGACAGCCCTCCAACTATCTGCTTGTGTCCCTGGCCGTGGCCGATCTCTCCGTGGCCATCGTGGTGATGCCGTTTGTGATCGTGACCGACCTGACCGGGGGAAAGTGGCTGTTTGGAGAGGTCTTCTGCAATATCTTCATCGGCATGGATGTGATGTGCTGCACCGCGTCCATCATGACGCTGTGCGTGATCAGTGTGGACAGG
>TCONS_00058655
ATACCTTGGCATCACCCGCCCTTTGACCTACCCTGCTCGTCAAAATGGTCAACTTATGGCCAAGATGATCTTTGGCGTGTGGCTGGTGTCTGCCTCCATCACGCTTCCGCCATTTTGCGGCTGGGCGAAGAACGTCAACACGGCTGGCGTCTGTCTGATCAGCCAGGACTTCGGCTACACCATCTACTCCACTGCTGTGGCCTTCTACATCCCCATGATCGTCATGCTCTTCATGTACTACAAGATCTTCAAAGCTGCCAGAAAAAGCGGCGCCAAGCATCGATTCACCGACTTCTCCCGCAGGGAACGACTTGAAACCGTCGCCAGCGAAGCTCTGAGGATGCAAGGCCTAAAACCTCAACACACGCCTGGAGTAGCAGAGGAGTGCGCCGCTCTTTCTCGATTGCTCAGCCGCGAACGACAGAACATCTCCATATTTAAGAGGGAGCAGAAAGCAGCGACCACACTTGGAGTGATAGTTGGAGTTTTTGGGATTTGCTGGCTGCCGTTTTTCATTCTTTCTACAGCGAGACCGTTCATTTGTGGGGTCAAGTGTAGTTGCATACCGATCTGGCTGGAGAGGACGCTGTTGTGGTTTGGATATGCAAATTCATTAATGAACCCCTTCATTTATGCTTTTTTCAATCGGGACCTGCGATCCACCTACAGAGACTTGCTACGTTGCAGATACCGGAATATAAACCGCCGACTGTCGGCTGTTGGTGTGCATGAGGCActgaag

Function

symbol description
htr7c Predicted to enable G protein-coupled serotonin receptor activity and neurotransmitter receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger and chemical synaptic transmission. Predicted to act upstream of or within several processes, including circadian rhythm; smooth muscle contraction; and vasoconstriction. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be active in dendrite. Predicted to be integral component of plasma membrane. Human ortholog(s) of this gene implicated in alcohol use disorder. Orthologous to human HTR7 (5-hydroxytryptamine receptor 7).

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007187 G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger biological_process
GO:0006939 smooth muscle contraction biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0007623 circadian rhythm biological_process
GO:0042310 vasoconstriction biological_process
GO:0007165 signal transduction biological_process
GO:0030425 dendrite cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0030594 neurotransmitter receptor activity molecular_function
GO:0004993 G protein-coupled serotonin receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060526-5 Predicted to enable G protein-coupled serotonin receptor activity and neurotransmitter receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger and chemical synaptic transmission. Predicted to act upstream of or within several processes, including circadian rhythm; smooth muscle contraction; and vasoconstriction. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be active in dendrite. Predicted to be integral component of plasma membrane. Human ortholog(s) of this gene implicated in alcohol use disorder. Orthologous to human HTR7 (5-hydroxytryptamine receptor 7).

Ensembl:

ensembl_id ENSDARG00000095272

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058653 False 1203 mRNA 0.53 2 16496273 16581486
TCONS_00058654 False 336 mRNA 0.58 1 16496393 16496728
TCONS_00058655 True 742 mRNA 0.52 1 16580739 16581480

Neighbor

gene id symbol gene type direction distance location
XLOC_029950 NA coding upstream 136242 16353235 ~ 16360031 (+)
XLOC_029949 znrf3 coding upstream 369367 15992655 ~ 16126906 (+)
XLOC_029948 NA coding upstream 509522 15985797 ~ 15986751 (+)
XLOC_029947 NA coding upstream 572804 15920924 ~ 15923469 (+)
XLOC_029946 hspb8 coding upstream 655788 15819651 ~ 15840485 (+)
XLOC_029952 CR759970.2 coding downstream 447812 17029298 ~ 17029414 (+)
XLOC_029953 NA coding downstream 470320 17051806 ~ 17069438 (+)
XLOC_029954 NA coding downstream 472830 17054316 ~ 17056958 (+)
XLOC_029955 NA coding downstream 728246 17309732 ~ 17542616 (+)
XLOC_029956 fbrsl1 coding downstream 1042977 17624463 ~ 17753961 (+)
XLOC_029945 BX649391.2 non-coding upstream 753020 15743137 ~ 15743253 (+)
XLOC_029941 NA non-coding upstream 1188798 15305135 ~ 15307475 (+)
XLOC_029960 NA non-coding downstream 1752542 18334028 ~ 18334386 (+)

Expression


Co-expression Network