XLOC_029954


Basic Information

Item Value
gene id XLOC_029954
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 17054316 ~ 17056958 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00061419
caggccttaaatttctttgtcgtcctattcagttttagaaatttcaatactgtttaaattaaatctgtgttcatcgaattaaagcaactaacatgataatcagctctattgctaaccgttttggaggttaacgttagacatcaggcaattgtactacttccactctcagctaaatgacactgtgactttgtgtacatacagaattgaaggtcaggtgttgctgactacagataggttcttaaatggaggcatgtgaaagcaaggaaagtgaaacttcagctagaccttgagttcaatttacaacatgaagatcctgctttcaacatctgatcaacacctgattttcatctgagagtaccaacatgttacaaatgagaattttccccacaaattctttgcacaactggaccaccacctatttcatttgatgacaattttaaggcaaacagcatccaaaactggcaagacagcagataccctggctaatcttttaaaggtttatgatgagcaggaactgaatgatgtcagttcatga
>TCONS_00061420
caggccttaaatttctttgtcgtcctattcagttttagaaatttcaatactgtttaaattaaatctgtgttcatcgaattaaagcaactaacatgataatcagctctattgctaaccgttttggaggttaacgttagacatcaggcaattgtactacttccactctcagctaaatgacactgtgactttgtgtacatacagaattgaaggtcaggtgttgctgactacagataggttcttaaatggaggcatgtgaaaggtgggtaaaatatttattttgtactactatgcctggcatatccagataaaataaatattacagtgtatttatcaatgatacttttgcagcaaggaaagtgaaacttcagctagaccttgagttcaatttacaacatgaagatcctgctttcaacatctgatcaacacctgattttcatctgaggtaaaaaatagataagtaaatgaaacataataataatattaatacattttttctagaattgtatattttgtggtgtgggtttgttttatgaaattctctcttgtttctttttgctgtttgcagagtaccaacatgttacaaatgagaattttccccacaaattctttgcacaactggaccaccacctatttcatttgatgacaattttaaggcaaacagcatccaaaactggcaagacagcagataccctggctaatcttttaaaggtttatgatgagcaggaactgaatgatgtcagttcatgacggactactgttatcagaggtcttttggtcttgctgcgtgagcgtgacttaagattctttaggaacaccatgattgataatcctgctgactgaagatgctttattggccctgcattcactgagggtctctgttgtcctgaagaatgaattggacaccacccacagcacacttccagacctttcttgtcttgtatggattaatcagactccagctcgtgacaatcccacatccgactactcactgtccttcacttacttcccggagcaccagagcacctcaccttgaagaagagcaccgtttacaccccattcacgttgtaaataaagcaccctccggggacttgtctttaaacttatccaactgtgtcgctgttttccctctgcctcgctacaatatatatatatatatatatatatataatctgctctccgttaaacagaaattggggggaaaaataaatgggggcgaataattctgacttcaacgatatatatatacagtttctgtgtagtttacactaaacgagtcacttcacagaatgtgcacttattatttttttaacgaatgccttaagagtaagttttacacttattaatgtattattaaattttattaaacttatagttgttttttcttgaggctcttatgtctgatatcatatttacattgtgggtaatttttatcaatttcagaatagtgttcattttcaatctctttatgtctaatagtttttatcgttttaagacatttgtaattgcataggagacaaatttgaaagtactgttggacattttttctttaacaataaatgtctaaaatggtattgtctgtgtgttttaaattactgatttattttgacagatttatggggtttaaagattaa

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0007517 muscle organ development biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0006396 RNA processing biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0061053 somite development biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0061061 muscle structure development biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0031167 rRNA methylation biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0030684 preribosome cellular_component
GO:0030686 90S preribosome cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0030515 snoRNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0140102 catalytic activity, acting on a rRNA molecular_function
GO:0008649 rRNA methyltransferase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00061419 False 535 lncRNA 0.37 4 17054316 17055158
TCONS_00061420 True 1631 lncRNA 0.35 4 17054316 17056958

Neighbor

gene id symbol gene type direction distance location
XLOC_029952 CR759970.2 coding upstream 24902 17029298 ~ 17029414 (+)
XLOC_029951 htr7c coding upstream 472830 16496273 ~ 16581486 (+)
XLOC_029950 NA coding upstream 694285 16353235 ~ 16360031 (+)
XLOC_029949 znrf3 coding upstream 927410 15992655 ~ 16126906 (+)
XLOC_029948 NA coding upstream 1067565 15985797 ~ 15986751 (+)
XLOC_029955 NA coding downstream 252774 17309732 ~ 17542616 (+)
XLOC_029956 fbrsl1 coding downstream 567505 17624463 ~ 17753961 (+)
XLOC_029957 chfr coding downstream 723517 17780475 ~ 17813299 (+)
XLOC_029958 ascc2 coding downstream 955196 18012154 ~ 18035253 (+)
XLOC_029959 hira coding downstream 990153 18047111 ~ 18072844 (+)
XLOC_029947 NA non-coding upstream 1130847 15920924 ~ 15923469 (+)
XLOC_029945 BX649391.2 non-coding upstream 1311063 15743137 ~ 15743253 (+)
XLOC_029960 NA non-coding downstream 1277070 18334028 ~ 18334386 (+)
XLOC_029961 NA non-coding downstream 1745229 18802187 ~ 18803334 (+)
XLOC_029962 NA non-coding downstream 1751756 18808714 ~ 18810213 (+)
XLOC_029963 NA non-coding downstream 1765853 18822811 ~ 19037584 (+)

Expression


Co-expression Network