XLOC_029964


Basic Information

Item Value
gene id XLOC_029964
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 18824394 ~ 18826765 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00061679
cctCACTGAGGTCAAATTGATTTACTCAAAgctttaaatatttccaaacatGCGACAAACCCAGATTACATTATACCAGAAGCAAACAGACCCATGTTCAAAAGGAGACGAAATCACCCCAAAAATAAAAGACAATGTGCAGCTCCCAAAAAATATGACCCATAAAAACATGAAATGTACTTCAATACTAGCCTGTAAAGCTTCTCAGTTGTAAACAACTGCTGAAATAACATTACTAGCacagaattattttaaaatgattaaaacgcAGCACTTTTTCTGGCTTGGTTGTGAGCGGTTGCAGCATATCCTTTCTCAATGTCaccaaaaacaatattttctGGATGGCGGCCTGCTGAAGTCGGTTACTGTgaaatgtgttgataaatgtTTCTGTGATATGCTGCAAAGCAAGTATAATGCATCATCAGTACACGTCAAACAGCTTGAATCTGATACAACATAAATCAGTTTTTGCTATTTTTCTTTGcagttttagattattttatggACTCATTCAGTcacagggttaaaaaaaaaaaaagaatcctaAATCTAACTTTAATTTACAAAGGGAAAAAGGACAAAACTGTGAGAAATAAActcacaatttagttttttcctcaGAATTGTGAGCTAACAagcttaaacattttaatttatgggCTTTTTTAATTGTGAGTCTATTCTGAtgtctttttttgctttgagttttTCTATCACAATGTTAATTTTAAGTGCTAATCTTGAAATTCAGAAAACACAAACAGCAATTTTGCGAAATAAAAGCACAACTGTTAGATTTGAACTTGCATTTAAAGAGTTTAGAACTCAAAtttgtgagatataaactcagTTCTGAGGACAAACAGAGATGCtgtgtcccaatttgcatactatgCATCCTAAATAGTTTTCTAAAATAGAATTCGTATatcccaaaccatagtatgttgaaaagagaaTGCCAAAGGTACCGGGATTGTTTACTATTTCGGATAAAAATTCGAAGAGTAGAATGGTCTATACTCTAACCGCTAATATTGCCCAAACATCAAGTAGAAAGGCTTCGGTgaagttgtttgaatgactataaatcaatatctagccaactgaAACATATTTAAACCACATTTTCTGTGTGATATTTCATCTgtaacaacaatgtgaacttatatcaagatatgtttggatattaacatctgaatgcataattacccaAAGATTTTTCTGCATGAAACCCTTGCAAATGGCAGATTAACCTGTTGTTGCTTCTCTAATgtaggtaattaaatatgaaagaaatgtggatgatgtgttgagatgattgacagggctcataaccAAGCAACATAGCGAtctgttaatgaggaagtagtatatgccaaagcttgcatactcttctgttacacactcaaaagtaggTACTTTTCCTATACAAAACAAATTTAATACTTTTAGGGCTGTAGTgcaagtatgtgaattgggacgcacCATCAGTTTCAGATGCAACTGAAACTGCAAGAATCCatgtgataaaataaaaacaacttccAGATTAGATCCTATACATCTGAACTTTGCACATTTCTTCCCTTTAATCCTAATGCGAAAatataaattatgtatataatctgGTGATCTAATGTAATAATACACGCTTATCTGAATATAATGTCATTGGAACCATCTTACGGATTCTGGTAGCAAAATATAAACACTACTTTTTCGTATGCGTGCAGCATCCTGATGAAAAATGCATTGGGGTAAAATGTAATAGAGGAATCCCATACAGGCAATGCCTACAGCGACAGTCTCTGAACGTGTAGATGAGACACATGTAGAATTAGATTGCAAGCCGACGTGTTTGGGGACGGCAGAGATAAAGCTATACACCAAAGAATGGCTCAAAGAATGAAGATGAGCTTCGGCTGTTGATCAAAACTTTTCACAAGCTTATATAAGGCGTACCGAAAGAACCAAGTAGTGTCATTGTAAAAGGAGGGAGGGTATAGTGTAGCACGCAACATGCAGCTGcacacaatatatacagtatgtatgtaaaaATATACAAGAATCTACAAGAATTTTTGGCCTATATGAGATTCAATCCAGTGCTGGACAGTGTGATATACTCTAGAAATTCAGCAGATGTGACGAAACACTATTTACTGATTAGATAGCTTCCAAAAAATACACTTCTGGTCATGTTTCTAAACTGGAATTGGAAAAAAGTCGCATTGACTTTATTATGGCAACATTTCGTACCAACTGGGGAAATGCGGTTTTC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00061679 True 2290 lncRNA 0.35 2 18824394 18826765

Neighbor

gene id symbol gene type direction distance location
XLOC_029962 NA coding upstream 14181 18808714 ~ 18810213 (+)
XLOC_029961 NA coding upstream 21060 18802187 ~ 18803334 (+)
XLOC_029960 NA coding upstream 490008 18334028 ~ 18334386 (+)
XLOC_029959 hira coding upstream 751550 18047111 ~ 18072844 (+)
XLOC_029958 ascc2 coding upstream 789141 18012154 ~ 18035253 (+)
XLOC_029965 pgam5 coding downstream 98602 18925367 ~ 18936235 (+)
XLOC_029966 NA coding downstream 241419 19068184 ~ 19079916 (+)
XLOC_029967 unc13ba coding downstream 267388 19094153 ~ 19237700 (+)
XLOC_029968 atp8b5a coding downstream 434626 19261391 ~ 19296249 (+)
XLOC_029969 rusc2 coding downstream 483112 19309877 ~ 19331482 (+)
XLOC_029955 NA non-coding upstream 1281778 17309732 ~ 17542616 (+)
XLOC_029954 NA non-coding upstream 1767436 17054316 ~ 17056958 (+)
XLOC_029971 NA non-coding downstream 573634 19400399 ~ 19403378 (+)
XLOC_029972 NA non-coding downstream 577767 19404532 ~ 19405938 (+)
XLOC_029980 NA non-coding downstream 1135030 19961795 ~ 19965283 (+)
XLOC_029982 BX547941.1 non-coding downstream 1250929 20077694 ~ 20077810 (+)

Expression


Co-expression Network