XLOC_029998 (limk2)


Basic Information

Item Value
gene id XLOC_029998
gene name limk2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 20823409 ~ 20863374 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058716
CTTGCCTGGAAAATTGACGAAACCCTGTTTCTCCGTTAAATCAGAGCTGGATTTAGGCTGCGGTTCTTACACATGGATCAGAAACGGAGCATCGTTGATGTGCACCGTGTGAACGTCAGGCTTTTCAGGACCAGCATGTGAGCTTgaacaaatataattaaatcaGATCGGGGAGGACATGGATGAACGAGAAGATGTGACGGAGCGCGCGTGCACGGGCTGTGGCGGGAGGATTCAGGACGCTTTTCATGTGAAGGTTCTTCAAGACGCCTGGCACAACTCATGCTTTCAGTGTTCTGTCTGCTTTGATCTCCTGACCAACTGGTACTTTGAGAAAGAGGGGAGGCTGTTCTGTCACAAACACTACTGCGAGAAGTTTGGGGAATTGTGCCATGGCTGCTCACTGCTTATGACGGGACCTGCCATGGTGGCAGGAGACTATAAATACCACCCCGAATGCTTTGTGTGTTTGAGCTGCAGGGTGGTGATTGAAGATAGAGACACCTATGCCTTAGTGGAACGTACAAAACTTTACTGTGGTAAATGCTACAAGCAGGTGGTCCTGACACCAGTGTTGGAGAAGCGGGGTTTGGCTGACTCTCCATCAGACCTGCTCCCTCACACAGTGACTCTGGTGTCCATGCCTGCTGCCACCAATGGCAAAAGAGGCTTCTCTGTCAGCGTGATTAGAGACTGCACCAGTGCCATTGCCAGCGTCCAGGTTAAAGAGGTCAGAGGGATGCATATTAGTCCTGAGGTTCGGAATGCCATCCATGTTGGGGACCGAATCCTGGAGATCAATGGACTCCCAGTGACATCCCTGATAGAGGAAGAGGTGGAGGACCTCATCCATCGGACCAGTCAGACACTGCAGCTGCTAATGGAATATGATCCAGTCAGACAGCGTCTGGACCGACTCCGTCTGGGCTCTCCCCGCAATAAGCTGGGTGTCCCTGTAGTGTCTCGTATGAGACTCTCCTCACCAGTAGATGCTGAGATTGAACGGAGTGACACAGTGGACAATGGGACGTTAAAGAGGAGGTCCCTCAGACGTAGCAACAGCATCTGCAAGTCTCCAGTCTCTTCATCTCCCAAGGACCATCTAGTTCTGACTCGAGATATCGGCCGCTCTGAATCTCTCCGCTCTCCTTCCAGCTGCTCTCACCGCATCTTCCGTCCCTGTGACCTCATCCATGGAGAAATCCTTGGCAAAGGCTTCTTTGGACAGGCCATTAAGGTGACCCATAAAGCCACTGGTGAGGTGATGGTCATGAAAGAGCTGATCCGCTGTGATGAAGAGACACAGAAAACGTTCCTaaaggagGTAAAAGTGATGAGAAGTCTTGATCACACACACGTTTTGAAGTTCATCGGGGTTTTGTACAAGGACAAGCGTCTTAATCTGATAACAGAGTTCATTGAGGGAGGCACTCTTAAGGATTTCATCCGAGACACGGACTCATTCCCATGGGAACAGAGAGTTAGTTTTGCAAAGAGCATTGCATCTGGAATGGCATATCTGCATTCAATGAGCATCATACATCGAGATCTCAACTCTCACAATTGCCTGGTCAAACTGGACAACACCGTCGTGGTGGCAGATTTTGGTTTATCTCGGTTAATCATGGAGGACAAAGTAAAGCAGCCTCCCCCGGACAAACCAACTAATAAGAAAAGGCTGTTTAGACGCATTGATCGCAAGAAACGCTACACGGTGGTGGGGAACCCTTACTGGATGGCCCCAGAGATGCTCAATGGTAAACGCTACGACGAGAAGGTGGATATTTTCTCCTTTGGCATTGTACTCTGTGAGATTATTGGTCAGGTTTATGCAGATCCCGAGTGTCTTCCAAGAACACTGGATTTTGGGCTGAATGTGCGAACGTTCATCGAGAAGTTTCTTCCTGAGCACTGTCCTCCTGCTTTCTTTGCATTGGCTGTGGCCTGTTGTGACCTCACTCCTGACAACCGGCCTGCTTTTCAAAAGCTGGAGGACTGTTTCGAGGCATTAACTTTCAATCAGGAGTTGAACATCCCTCTACCTGCTGAACTGGACGAACTTCAGCAGAAGTTTTTAAGGACTTATGGACCCAGTGAAATCGCCTCTGAAAACCAGGAAAACAACAGGAACTAATCCAATGGCAGCGCAGGCCGAGCTggaaacttttttgttttgttgataaGTTTACAGAACTGGAGAGCATTTACCTTGTATTGGCATACTGGGAACATGCTGATGCTGACGTTCCTTTGGAGATCTCTCATGTCATGTAGAACTTTGAGGGCATTCTTGAACTGAAGGTTCTGTTGAGGGAACGGGTACATTTCAGTGAGCTTCAGCTTCTTTCTgatggagtttttttttccctttttcggTCTACTTTTGTAACTAGCAGGTCTAACTAATTGATGATTTAACCAGGTAACTGCAACCATTAAGAGTGCCTGTCATTAGATGAGTTCTGATCGATTGTTCTGATGAAGTAATATCAGAAATAGTGTGGTGTCATCTACTTAAACAATGATGTTTgactatataattaaaaaaaaagtttgtttggtGAATCTAATGAAACTAGTCCAAAATATGTCACATTTCACCCCAGAATGcaaattcattatctgttaaaatttaaaagtctaaacgcacaataataattattgagGAAATGTACTTAATTGTCACAAATAATACAGTGAAAATAAAGGCTGAAATGTGACGGTCATGTTTGAACCTCTTCTCTTCATAAGTTTTTGttgactattttttttattttttaatttttaaatgaccTAAACTGTAGGAATGTAAATGACTTGTTGTTCCACACTGCCCTCTGCAGGTGCCTTTGTGCACTCAACCCTTGTTGGTTTCAGTACCACAAGCACTTGAGGTCCTGTTACTCTTTAATACGAAGACCGTGACAAAACTGTTACGAAATGAAGTAACAAGTTTCTGAGTTTTGATTTGGTTTCATATGTGTGGTGGTTTCTCAGAAATGCTTTGTGTTTTTCATATTGTAGCTCATTTTTGGTACATCAGCTATATGAGAACTGGAGTTGTCTATTCCTCTGTCAAGGACTCACCTTGTAAATATACCTTGGCAGGGAGTAAAAACAAATATTCTGTATCTAAACTTCTCTGGAGTTGAAGTGAAATGATAAGTGAGATCGTAATGCTGGATCCTGACTGGCCGTTTCAATGATTTCTCATAAGTGAAACAGGCTGTAATCAAAATAAATCTGAACAAGTGACGTTTTGTGAGGatgtttggagaaaaaaaaacgaatgTCATCCTCACTTTGATCACAGGTGTTTAATTTAAAACTGGATATATTTTTCATGTTTGTAAAGATTTGTTGCCAAATGTGGATGTGTAGTTTGCATATGTTTGTAGAATGTGAAAAGCTGTATAAAGATGTTTTTTCTTAGTCTTATCTGTCAATGGTACTgacatgtataaaaatataaccaCTACTTGTATGCCACAGGATTTACACGTATGTTTCATGAATAAAGACGAGTTAGTAATGGC
>TCONS_00058717
AGGCTGCGGTTCTTACACATGGATCAGAAACGGAGCATCGTTGATGTGCACCGTGTGAACGTCAGGCTTTTCAGGACCAGCATGTGAGCTTgaacaaatataattaaatcaGATCGGGGAGGACATGGATGAACGAGAAGATGTGACGGAGCGCGCGTGCACGGGCTGTGGCGGGAGGATTCAGGACGCTTTTCATGTGAAGGTTCTTCAAGACGCCTGGCACAACTCATGCTTTCAGTGTTCTGTCTGCTTTGATCTCCTGACCAACTGGTACTTTGAGAAAGAGGGGAGGCTGTTCTGTCACAAACACTACTGCGAGAAGTTTGGGGAATTGTGCCATGGCTGCTCACTGCTTATGACGGGACCTGCCATGGGGCCATCAAAGCGAATGCATTGGATAGAGGTGGCAGGAGACTATAAATACCACCCCGAATGCTTTGTGTGTTTGAGCTGCAGGGTGGTGATTGAAGATAGAGACACCTATGCCTTAGTGGAACGTACAAAACTTTACTGTGGTAAATGCTACAAGCAGGTGGTCCTGACACCAGTGTTGGAGAAGCGGGGTTTGGCTGACTCTCCATCAGACCTGCTCCCTCACACAGTGACTCTGGTGTCCATGCCTGCTGCCACCAATGGCAAAAGAGGCTTCTCTGTCAGCGTGATTAGAGACTGCACCAGTGCCATTGCCAGCGTCCAGGTTAAAGAGGTCAGAGGGATGCATATTAGTCCTGAGGTTCGGAATGCCATCCATGTTGGGGACCGAATCCTGGAGATCAATGGA
>TCONS_00058718
CAAAGCAGATGAAGCACAATGAAAGCATGATCCACCACGCCTGGGCTTGGCAGAGATAGCACCAAGAGTGCACAGGAGAATTCCAGAAAGACTTTCTTGGATATCGATCAAGGCTGGGGTTCCTGGCACTGAGGATTTTCTTTTGGGATGTCCAGTGTGGGCTTTTGAAGTGAAGTCGTCAGACTGTGCAGCCGTGATCTAATCTGAACGGGGGTATTCGTATGTTTCAGGTGGCAGGAGACTATAAATACCACCCCGAATGCTTTGTGTGTTTGAGCTGCAGGGTGGTGATTGAAGATAGAGACACCTATGCCTTAGTGGAACGTACAAAACTTTACTGTGGTAAATGCTACAAGCAGGTGGTCCTGACACCAGTGTTGGAGAAGCGGGGTTTGGCTGACTCTCCATCAGACCTG

Function

symbol description
limk2 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in actin cytoskeleton organization. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including axial vasculature; cephalic musculature; digestive system; mid cerebral vein; and nervous system. Orthologous to human LIMK2 (LIM domain kinase 2).

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0016310 phosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
ko04810 Regulation of actin cytoskeleton
ko04666 Fc gamma R-mediated phagocytosis
ko04360 Axon guidance
ko05170 Human immunodeficiency virus 1 infection
ko01001 Protein kinases

ZFIN:

id description
ZDB-GENE-040718-398 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in actin cytoskeleton organization. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including axial vasculature; cephalic musculature; digestive system; mid cerebral vein; and nervous system. Orthologous to human LIMK2 (LIM domain kinase 2).

Ensembl:

ensembl_id ENSDARG00000005104

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058716 False 3536 mRNA 0.44 16 20823409 20863374
TCONS_00058717 False 781 mRNA 0.51 7 20823463 20845987
TCONS_00058718 True 416 lncRNA 0.49 2 20843977 20845423

Neighbor

gene id symbol gene type direction distance location
XLOC_029997 si:ch211-240b21.2 coding upstream 127506 20693724 ~ 20695903 (+)
XLOC_029996 BX510312.1 coding upstream 148359 20674933 ~ 20675050 (+)
XLOC_029995 cmklrl2 coding upstream 208978 20613466 ~ 20614431 (+)
XLOC_029994 cmklrl2 coding upstream 222872 20599658 ~ 20600537 (+)
XLOC_029993 cmklr1 coding upstream 232614 20570573 ~ 20590795 (+)
XLOC_029999 si:dkey-174n20.1 coding downstream 58726 20922100 ~ 20928198 (+)
XLOC_030000 hs3st1l2 coding downstream 236982 21100356 ~ 21141090 (+)
XLOC_030001 cds2 coding downstream 280895 21144269 ~ 21172199 (+)
XLOC_030002 arhgap25 coding downstream 317673 21181047 ~ 21204069 (+)
XLOC_030003 bmp10 coding downstream 347761 21211135 ~ 21214299 (+)
XLOC_029992 NA non-coding upstream 276920 20542900 ~ 20546489 (+)
XLOC_029982 BX547941.1 non-coding upstream 745599 20077694 ~ 20077810 (+)
XLOC_029980 NA non-coding upstream 858126 19961795 ~ 19965283 (+)
XLOC_029972 NA non-coding upstream 1417471 19404532 ~ 19405938 (+)
XLOC_030005 BX470224.3 non-coding downstream 394844 21258218 ~ 21259238 (+)
XLOC_030006 BX470224.2 non-coding downstream 407076 21270450 ~ 21271359 (+)
XLOC_030007 BX470224.1 non-coding downstream 410791 21274165 ~ 21278501 (+)
XLOC_030008 NA non-coding downstream 421668 21285042 ~ 21285547 (+)
XLOC_030013 NA non-coding downstream 1144405 22007779 ~ 22008067 (+)

Expression


Co-expression Network