XLOC_003011 (taar18a)


Basic Information

Item Value
gene id XLOC_003011
gene name taar18a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 40523707 ~ 40524741 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005527
aacaaactcctaACAGGAGGAGACTCACTCATGGCCTACGAGACAGAGGATCAGGAGACTCAATACTGCTTTCCTGACATCAACTCATCGTGTGTGAAGGAAAATCGCTCCAAACATGAATACAATATCATGTATGTGTTCTTTTCATTGCTGTCAGCATGGACTGTGTTTCTGAACCTGCtggtgatcatctccatctctcacttcaaGAAGCTTCACACTCCAACCAACATGATTATTCTCTCTCTGGCAGTAAATGATCTGCTTCTTGGACTTATAGTGATGCCTGTTGATGCCGTCAAGTTGATTGAGACATGTTGGTATTTTGGAGACATTTTGTGTGACCTGTATATGATTATCATGGGACTTCTCCTCTCAGCATCTCttagtaatttaattttaattgctgTTGATCGTTATGTGGCTATTTGTCACCCTTTATTGTACCCACAGAAAATAACAATGACTAGAACTTTAATTAGCATCTTTGTCTGCTGGTTTGTCTGCTTGACTAACAATATTGCTTTTCTAGTTAGTAGCagacattttgacattttgcaaaaaacaaacatgtgccATGGACAATGCACTTTGATTGTAAGTTTTTCATGGACTTTTACTGACCTCTTCCTTTCCTTCCTAGTACCCTGTACTCTGATTATAACTTTGTATTTGAGAATATTTTATGTTGCTTATCAGCAAGTAAAAGTTATCAATGCTATTATAAAGGGTGGTAAATGTGCAGTGGAGGGTTCAGTGAAGCGGAAATCTGAGCGCAAAGCTGCTCTCACATTAGGAATTGTTGTGACAGTTTATCTACTTTGCTATATTCCCTACTATATATTGTCTGTTATAGGGACCACAGTAATATCTTCCACGATGAAAATTCTGATTTGGTCTTTGTACATTAACTCCTGTCTAAATCCTCTGATCTATGCTTTATTTTATCGCTGGTTTAAAATATCAGTTAAATGCGTCTTAACTCTTAAAATATTAGAGCCAGCTTCCTCACtcttagatatttttaaagataat

Function

symbol description
taar18a Predicted to enable trace-amine receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0001594 trace-amine receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-100514-5 Predicted to enable trace-amine receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000054254

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005527 True 1035 mRNA 0.37 1 40523707 40524741

Neighbor

gene id symbol gene type direction distance location
XLOC_003010 CR396590.6 coding downstream 2607 40520823 ~ 40521100 (-)
XLOC_003009 BX530037.3 coding downstream 6109 40516749 ~ 40517598 (-)
XLOC_003008 taar19k coding downstream 9064 40513612 ~ 40514643 (-)
XLOC_003007 taar20b1 coding downstream 15150 40507529 ~ 40508557 (-)
XLOC_003006 si:dkey-181m19.17 coding downstream 20291 40502370 ~ 40503416 (-)
XLOC_003012 taar18g coding upstream 2502 40527243 ~ 40528259 (-)
XLOC_003013 taar18d coding upstream 6388 40531129 ~ 40532157 (-)
XLOC_003014 taar18e coding upstream 11236 40535977 ~ 40536990 (-)
XLOC_003015 CR396590.4 coding upstream 12699 40537440 ~ 40538047 (-)
XLOC_003016 taar18f coding upstream 18169 40542910 ~ 40543923 (-)
XLOC_003005 NA non-coding downstream 24498 40498159 ~ 40499209 (-)
XLOC_003004 NA non-coding downstream 33070 40489637 ~ 40490637 (-)
XLOC_003000 BX530037.2 non-coding downstream 54313 40468372 ~ 40469394 (-)
XLOC_003023 NA non-coding upstream 96240 40620981 ~ 40621955 (-)
XLOC_003024 BX001050.1 non-coding upstream 216589 40741330 ~ 40741447 (-)
XLOC_003028 NA non-coding upstream 326396 40851137 ~ 40857097 (-)
XLOC_003029 CU929265.1 non-coding upstream 378380 40903121 ~ 40903237 (-)

Expression


Co-expression Network