XLOC_003014 (taar18e)


Basic Information

Item Value
gene id XLOC_003014
gene name taar18e
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 40535977 ~ 40536990 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005530
AAACTCTTAACAGGAGGAGACTCACTCATGGCCTTTGAGACAGAAGATCAGGAGACTCAATACTGCTTTCCTGACATCAACTCATCATGTGTCAAGGGAAAACGCTCCAGACATGAATACAATatcatgtatgtgtttttttcacTGCTGTCGGCATGGACTGTGTTTCTGAACCTGCtggtgatcatctccatctctcacttcaaGAAGCTTCACACTCCAACCAACATGATTATTCTCTCTCTGGCTGTAAATGATCTGCTTATTGGACTTATTATCATGCCTCTTGAGGCCATCAAACTGATTGAGACATGCTGGTACTTTGGAGAAACTTTTTGTGGACTGTTTATGATAATCATGGGGCTCCTTGGATCAACATCTCTaagtaatttagttttaattgctGTTGATCGTTATGTGGCTGTGTGCCACCCTTTACTGTACCCCCAGAAAATAACCATGTCTAAAACATTAGTAACTATCTGCCTCTGTTGGTTATTTTCCTCTGCTTACTGCTCTGTTTTTGTAGTCAGCAACAAATATTTTGACTCTTCAAACAGAACAGATGTGTGTTATGGCATGTGCACATTAAATCTTAGTTTTACTTACATCATCGTTGATTTGATATATTCCTTTTTGTTGCCTTGTGTTGTGATGATCACAGTATATTTGAGGATATTTTATGTTGCTATTAAGCAAGTGAAGGTTATAAACTTTCTGATGAAGGGTCGTAGGGAAAGTTCAGTCAAGAGGAAATCTGAGCACAAAGCTGCTCTCACATTAGGGATTGTTGTGACTGTCTATCTGCTTTGCTTTATTCCATACTATTTATTGTCTGTAATGGGTGTCTCGTCTGGTACACTGACATATCTGTTGTGGACTTTGTATGCTAATTGTGTTGTGAATCCTCTTATCTATGCTTTATTTTACCGCTGGTTTAAAAAATCAGTTAAACACATCTTGACTTTTAAAATATTGGAGCCAGCATCCTCACTCTTGGATATTTTTACAGAT

Function

symbol description
taar18e Predicted to enable trace-amine receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0001594 trace-amine receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-100514-8 Predicted to enable trace-amine receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000109383

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005530 True 1014 mRNA 0.38 1 40535977 40536990

Neighbor

gene id symbol gene type direction distance location
XLOC_003013 taar18d coding downstream 3820 40531129 ~ 40532157 (-)
XLOC_003012 taar18g coding downstream 7718 40527243 ~ 40528259 (-)
XLOC_003011 taar18a coding downstream 11236 40523707 ~ 40524741 (-)
XLOC_003010 CR396590.6 coding downstream 14877 40520823 ~ 40521100 (-)
XLOC_003009 BX530037.3 coding downstream 18379 40516749 ~ 40517598 (-)
XLOC_003015 CR396590.4 coding upstream 450 40537440 ~ 40538047 (-)
XLOC_003016 taar18f coding upstream 5920 40542910 ~ 40543923 (-)
XLOC_003017 taar18c coding upstream 15048 40552038 ~ 40553090 (-)
XLOC_003018 taar18b coding upstream 19213 40556203 ~ 40557210 (-)
XLOC_003019 taar16b coding upstream 51812 40588802 ~ 40589776 (-)
XLOC_003005 NA non-coding downstream 36768 40498159 ~ 40499209 (-)
XLOC_003004 NA non-coding downstream 45340 40489637 ~ 40490637 (-)
XLOC_003000 BX530037.2 non-coding downstream 66583 40468372 ~ 40469394 (-)
XLOC_003023 NA non-coding upstream 83991 40620981 ~ 40621955 (-)
XLOC_003024 BX001050.1 non-coding upstream 204340 40741330 ~ 40741447 (-)
XLOC_003028 NA non-coding upstream 314147 40851137 ~ 40857097 (-)
XLOC_003029 CU929265.1 non-coding upstream 366131 40903121 ~ 40903237 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000158_00047164_00048174 NA coding CI01000158 null 46972 ~ 48353 (-)