RNA id: TCONS_00005530


Basic Information

Item Value
RNA id TCONS_00005530
length 1014
RNA type mRNA
GC content 0.38
exon number 1
gene id XLOC_003014
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 40535977 ~ 40536990 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAACTCTTAACAGGAGGAGACTCACTCATGGCCTTTGAGACAGAAGATCAGGAGACTCAATACTGCTTTCCTGACATCAACTCATCATGTGTCAAGGGAAAACGCTCCAGACATGAATACAATatcatgtatgtgtttttttcacTGCTGTCGGCATGGACTGTGTTTCTGAACCTGCtggtgatcatctccatctctcacttcaaGAAGCTTCACACTCCAACCAACATGATTATTCTCTCTCTGGCTGTAAATGATCTGCTTATTGGACTTATTATCATGCCTCTTGAGGCCATCAAACTGATTGAGACATGCTGGTACTTTGGAGAAACTTTTTGTGGACTGTTTATGATAATCATGGGGCTCCTTGGATCAACATCTCTaagtaatttagttttaattgctGTTGATCGTTATGTGGCTGTGTGCCACCCTTTACTGTACCCCCAGAAAATAACCATGTCTAAAACATTAGTAACTATCTGCCTCTGTTGGTTATTTTCCTCTGCTTACTGCTCTGTTTTTGTAGTCAGCAACAAATATTTTGACTCTTCAAACAGAACAGATGTGTGTTATGGCATGTGCACATTAAATCTTAGTTTTACTTACATCATCGTTGATTTGATATATTCCTTTTTGTTGCCTTGTGTTGTGATGATCACAGTATATTTGAGGATATTTTATGTTGCTATTAAGCAAGTGAAGGTTATAAACTTTCTGATGAAGGGTCGTAGGGAAAGTTCAGTCAAGAGGAAATCTGAGCACAAAGCTGCTCTCACATTAGGGATTGTTGTGACTGTCTATCTGCTTTGCTTTATTCCATACTATTTATTGTCTGTAATGGGTGTCTCGTCTGGTACACTGACATATCTGTTGTGGACTTTGTATGCTAATTGTGTTGTGAATCCTCTTATCTATGCTTTATTTTACCGCTGGTTTAAAAAATCAGTTAAACACATCTTGACTTTTAAAATATTGGAGCCAGCATCCTCACTCTTGGATATTTTTACAGAT

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0001594 trace-amine receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-100514-8 Predicted to enable trace-amine receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000132523

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005521 lncRNA downstream 36768 40498159 ~ 40499209 (-) True XLOC_003005
TCONS_00005520 lncRNA downstream 45340 40489637 ~ 40490637 (-) True XLOC_003004
TCONS_00006122 lncRNA downstream 1445889 39087325 ~ 39090088 (-) True XLOC_002973
TCONS_00005778 lncRNA downstream 1871743 38663993 ~ 38664234 (-) True XLOC_002970
TCONS_00005474 lncRNA downstream 2009267 38511908 ~ 38526710 (-) True XLOC_002969
TCONS_00005779 lncRNA upstream 83991 40620981 ~ 40621955 (-) True XLOC_003023
TCONS_00006123 lncRNA upstream 314147 40851137 ~ 40857097 (-) True XLOC_003028
TCONS_00005562 lncRNA upstream 831118 41368108 ~ 41368637 (-) True XLOC_003034
TCONS_00006124 lncRNA upstream 1445919 41982909 ~ 41986276 (-) False XLOC_003040
TCONS_00006126 lncRNA upstream 1445919 41982909 ~ 41986363 (-) False XLOC_003040
TCONS_00005529 mRNA downstream 3820 40531129 ~ 40532157 (-) True XLOC_003013
TCONS_00005528 mRNA downstream 7718 40527243 ~ 40528259 (-) True XLOC_003012
TCONS_00005527 mRNA downstream 11236 40523707 ~ 40524741 (-) True XLOC_003011
TCONS_00005524 mRNA downstream 21334 40513612 ~ 40514643 (-) True XLOC_003008
TCONS_00005523 mRNA downstream 27420 40507529 ~ 40508557 (-) True XLOC_003007
TCONS_00005532 mRNA upstream 5920 40542910 ~ 40543923 (-) True XLOC_003016
TCONS_00005533 mRNA upstream 15048 40552038 ~ 40553090 (-) True XLOC_003017
TCONS_00005534 mRNA upstream 19213 40556203 ~ 40557210 (-) True XLOC_003018
TCONS_00005535 mRNA upstream 51812 40588802 ~ 40589776 (-) False XLOC_003019
TCONS_00005536 mRNA upstream 51917 40588907 ~ 40589641 (-) True XLOC_003019
TCONS_00005526 other downstream 14877 40520823 ~ 40521100 (-) True XLOC_003010
TCONS_00005525 other downstream 18379 40516749 ~ 40517598 (-) True XLOC_003009
TCONS_00005514 other downstream 66583 40468372 ~ 40469394 (-) True XLOC_003000
TCONS_00005507 other downstream 116918 40418807 ~ 40419059 (-) True XLOC_002993
TCONS_00005503 other downstream 131646 40403994 ~ 40404331 (-) True XLOC_002989
TCONS_00005531 other upstream 450 40537440 ~ 40538047 (-) True XLOC_003015
TCONS_00005540 other upstream 204340 40741330 ~ 40741447 (-) True XLOC_003024
TCONS_00005547 other upstream 366131 40903121 ~ 40903237 (-) True XLOC_003029
TCONS_00005570 other upstream 1432901 41969891 ~ 41979664 (-) True XLOC_003039
TCONS_00005579 other upstream 1574582 42111572 ~ 42131408 (-) True XLOC_003044

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000158_00047164_00048174.mRNA True 1382 mRNA 0.35 1 CI01000158 46972 ~ 48353 (-)