RNA id: CI01000158_00047164_00048174.mRNA


Basic Information

Item Value
RNA id CI01000158_00047164_00048174.mRNA
length 1382
RNA type mRNA
GC content 0.35
exon number 1
gene id CI01000158_00047164_00048174
representative True

Chromosome Information

Item Value
chromosome id CI01000158
NCBI id null
chromosome length 1938735
location 46972 ~ 48353 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTTTTGGTTCTGGTGCACAGTAATTTCACTAACAAGTTTGGAATTCTTAAAAGAAAATAATTGTCATTGCATTGTCAGAGTGGGCGGTAAATGGGTTGGTCATTCTGATCAGACACTGTATAAACGAAAGGACAGTAAGGAGAGCAGAACAAACTCCTAACAGGAGGAGACTCACTCATGGCCTATGAGACAGAGGATCATGATACTCAGTACTGCTTTCCTGCCATCAACTCATCATGTATCAAGGGAAAACGCTCCAGACATGAATACAATATCATGTATGTGTTTTTTTTTTCATTGCTGTCAGCATGGACTGTGTTTCTGAACCTGCTGGTGATCATCTCTATCTCTCACTTCAAGAAGCTTCACACTCCAACCAACCTGATTATTCTCTCTCTGGCTATGGCTGATCTACTTATTGGACTCATTGTGATGCCAATAGAGGCCAATAGGCTGATTGATATGTGTTGGTACTTTGGAGACACTTTCTGTGGACTGTTTATGATAATCATGGGACTGCTCGGCTCAACATCTATTAGCAATTTAGTTTTAATAGCTGTTGATCGTTATGTGGCTGTGTGTCACCCTTTATTGTACCCACAGAAAATAACAATGACTAAAACTTTAGTAAGCATCTGTCTCTGTTGGTTTTTCTCCTCAGCCTACAACACTGCCTTTATAATCAGCAACAAATATTTTGACCCTTCAAGCAGAACAGATGAGTGTTACGGAGAGTGTACCTTAACAGTTAGTTTTACCTTTAGGGTTATTGATGAGATATATTCCTTCCTGTTGCCTTGTACTGTGATAATCACTGCATATTTGAGAATATTTTATGTTGTTAATCAACAGGTGAAAGTTATAAACTCTATGATGAAGAGTGGTAAATGTGTAATGGAGAGTTCAGTGAGGAGGAAATCTGAGAGCAAAGCTGCTCTGACATTAGGAATTATTGTGACAGCTTATCTGCTGTGCTTTATTCCATACTATATCTTGTCTTTAATTGGGACTACAGTAATCTCTTCTACCACAATGACATTTTTATTATGGACTTTGTATATTAACACAGGTCTGAATCCTCTTATCTATGCTTTGTTTTACAGTTGGTTTAAAATATCAGTTAAACACATCTTAACACTTAAAATATTGGAGCCAGCATCCTCTCTCATTGATATTTTTACAGGCTGATTTAAGTTTGTTTGTTTGTTTATTTATTTATTTATTTATTAGTTTAAAGTATTGTCTCAGTTTATAAACTGGGTGTAAACACAATGGCTACCAGATGTCTTTATTTAATTGCAATTAGCTAAATTAATGTGAGATATTTTAAAGATGTTAATAATCAATAATAATAATTTAATCTGTAATGGTATAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU414151 lncRNA upstream 5583 53936 ~ 54169 (-) True G363076
TU414163 lncRNA upstream 14717 63070 ~ 63299 (-) True G363084
TU414173 lncRNA upstream 33496 81849 ~ 82094 (-) True G363094
TU414180 lncRNA upstream 49902 98255 ~ 99217 (-) True G363101
TU414185 lncRNA upstream 56549 104902 ~ 105200 (-) True G363106
CI01000158_00038644_00043001.mRNA mRNA downstream 3944 38071 ~ 43028 (-) True CI01000158_00038644_00043001
CI01000158_00036387_00037400.mRNA mRNA downstream 9545 35917 ~ 37427 (-) True CI01000158_00036387_00037400
CI01000158_00029380_00034355.mRNA mRNA downstream 12257 28837 ~ 34715 (-) True CI01000158_00029380_00034355
CI01000158_00017507_00018520.mRNA mRNA downstream 28425 17011 ~ 18547 (-) True CI01000158_00017507_00018520
CI01000158_00015062_00016075.mRNA mRNA downstream 30870 13868 ~ 16102 (-) True CI01000158_00015062_00016075
CI01000158_00102003_00103016.mRNA mRNA upstream 53499 101852 ~ 103043 (-) True CI01000158_00102003_00103016
CI01000158_00113468_00114478.mRNA mRNA upstream 64638 112991 ~ 114505 (-) True CI01000158_00113468_00114478
CI01000158_00129735_00137154.mRNA mRNA upstream 80829 129182 ~ 137211 (-) True CI01000158_00129735_00137154
CI01000158_00161749_00163076.mRNA mRNA upstream 112634 160987 ~ 163158 (-) True CI01000158_00161749_00163076
CI01000158_00176124_00177494.mRNA mRNA upstream 125903 174256 ~ 177778 (-) True CI01000158_00176124_00177494
TU414879 other upstream 249426 314404 ~ 315389 (-) True G363736
TU414877 other upstream 671693 722381 ~ 722512 (-) True G363734
TU415299 other upstream 1407781 1479208 ~ 1501547 (-) True G364103
TU415405 other upstream 1639613 1687966 ~ 1688828 (-) True G364203

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00005530 True 1014 mRNA 0.38 1 NC_007121.7 40535977 ~ 40536990 (-)