CI01000158_00029380_00034355 (TAAR20T)


Basic Information

Item Value
gene id CI01000158_00029380_00034355
gene name TAAR20T
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000158
NCBI id null
chromosome length 1938735
location 28837 ~ 34715 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000158_00029380_00034355.mRNA
AAGGAAAATATTAGTGGTTTTGAAACCATGACATTTTCAAACCGCGGTATACCTTGAAACTGGTAACCGGCCCATGCCTAGTTACTTGTGAGGTTCCATGACAGTTGGAAGACAATTGCCTTTGTAGGTTGTTATATATAAAGTATCTGTAAATCACAATATTTATGTGTAAATGCATCTCAGATATGATTTAAACCAGCTTTGACCCTCCATGTCCACTTTCCTTAAGAGTTTTGCACAAGCTAATCAAGGTCTTCAGGATTTATAGAAAGTTATAGGCAGTTGAGTTTGATCAAGGTTGGACCTAAACTCTGCAGGAAAGTGGACATCAAAGGCCAGAGTTTTTTCATTGCTGTCAGCATGGACTGTGTTTCTGAACCTGCTGGTGATCATCTCCATCTCTCACTTCAAGAAGCTTCACACTCCAACCAACCTGATTATTCTCTTTCTGGCTGTGACCAACTGCTTACTGGACTTTTTGTGTTGCCCATAAAGGCCACTAGACTGATTGAAATGTGTTGGTACTTTGGAGACCTTCTGTGGACTGTTTATGATAATCATGAGACATGGACTGTGTTTCTGAACCTGCTGGTGATCATCTCAATCTCTCACTTCAAGAAGCTTCACACTCCAACCAACCTGATTATTCTCTCTCTGGCTGTGGCTGACCTGCTTGTTGGACTTATTGTGATGCCTGTGGATGCCATAAAGCTGATTGAGACATGCTGGTTCTTTGGAGACACTTTGTGTGACCTGTTTATGATAATCATGGGTCTGCTCCTGTCAACATCCATTTGTAATTTAGTTTTAATTGCTATTGATCGTTATGTGGCTGTGTGTACCCCTTTACTGTACCCACAGAAAATAACCACAACTAAAACCTTAATAAGCATCTGTCTCTGCTGGTTTTTCTCCTTTGCCTACAATACTACTGTTTATCTGATTGGTGGCAGATATTTTGAAAGAACAGACACATGCTATGGAAAGTGCTATTTAATAATAGGTTTTTCATGGATAGTCATTGACCTGTTCTTTTCTTTCTTGTTTCCTTTGACTGTGATCATAACTTTATATTTGAGGATATTTTATGTTGCACATCAGCAAGTGAAAGTTATAAACTCTCTGATGAAGAGTGGTAAATGTGTAATGGAGAGTTCAGTGAGGAGGAAATCTGAGAGCAAAGCTGCTCTGACATTAGGAATTATTGTGACAGCTTATCTGCTATGCTATATTCCATACTATATCTTGTCTTTAACAAGTAGTACAATAATCTCTTCTGCTACAATGACATTTCTACTATGGACTATATATGCTAACTCAGGCATGAATCCTGTTGTCTATGCTTTATTTTACCGCTGGTTTAAAATATCAGTTAAACACATCTTAACTCTTAAAATATTGAAGCCAGCATCCTCTCTCTTAGACATATTTACAGATTATTCATAATTGTAGATTTTTCCCCCCTTTGTTTTAATTTGATGAAGCACAGACTAATGTATAGTTTTTTTTTTGTTTGTTTGTTTTTTTTATCTCAGTTTGTAAACTGAATGTGAACATACTGGATACCAGATGTCTTTATGTACCATAAGATATTTTAAAGACATTTTAAATGAAGGTAAATAATTACATTTACCTTGCAAGAATCTGATGTGCTTATGTTAAATTAGTTATAGAGGCAGGTCTGACCATTATTTTAATTTTAGTTACCTGCATAACTCATTATTTGTGGGTATAATTGAGTAAGTCAACATGTTTAGTCTATGATTAGTGTTTATTTGTTTTGGGATTTAATTGTTTAATTCTTATTCATGTCTAGGCCTCAAAAATATAAATTAATGATAAAAACAACAACAACAAAACAAAATAAAAATAAATAAATAAACAAATAAAAAAGAAGAAGAGATGCCTTTTCATTGCAGTAATTCTGAAACAGATCTGAAGTGGACATGACATTAAACACCATGTTATTAGGGTAATTTGAGCAATAAA

Function

symbol description
taar20t Predicted to enable trace-amine receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in olfactory epithelium. Human ortholog(s) of this gene implicated in schizophrenia and schizophrenia 5. Orthologous to human TAAR6 (trace amine associated receptor 6); TAAR8 (trace amine associated receptor 8); and TAAR9 (trace amine associated receptor 9).

NR:

description
Taar9 protein, partial

GO:

id name namespace
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K05051 TAAR; trace amine associated receptor

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000158_00029380_00034355.mRNA True 1989 mRNA 0.35 2 28837 34715

Neighbor

gene id symbol gene type direction distance location
CI01000158_00017507_00018520 NA coding downstream 10290 17011 ~ 18547 (-)
CI01000158_00015062_00016075 NA coding downstream 12735 13868 ~ 16102 (-)
CI01000158_00012727_00013731 NA coding downstream 15072 12592 ~ 13765 (-)
CI01000158_00001235_00005003 NA coding downstream 23807 1218 ~ 5030 (-)
CI01000158_00036387_00037400 NA coding upstream 1202 35917 ~ 37427 (-)
CI01000158_00038644_00043001 NA coding upstream 3356 38071 ~ 43028 (-)
CI01000158_00047164_00048174 NA coding upstream 12257 46972 ~ 48353 (-)
CI01000158_00102003_00103016 NA coding upstream 67137 101852 ~ 103043 (-)
CI01000158_00113468_00114478 NA coding upstream 78276 112991 ~ 114505 (-)
G363076 NA non-coding upstream 19221 53936 ~ 54169 (-)
G363084 NA non-coding upstream 28355 63070 ~ 63299 (-)
G363094 NA non-coding upstream 47134 81849 ~ 82094 (-)
G363101 NA non-coding upstream 63540 98255 ~ 99217 (-)
G363106 NA non-coding upstream 70187 104902 ~ 105200 (-)
CI01000158_00286848_00307666 NA other upstream 263064 286545 ~ 307666 (-)
CI01000158_00717478_00721819 STAMBPA, STAMBP other upstream 685331 717291 ~ 722084 (-)
G364103 NA other upstream 1421419 1452257 ~ 1501547 (-)
G364203 NA other upstream 1653251 1687966 ~ 1688828 (-)

Expression


Co-expression Network