LOC110486692 (LOC106606873)


Basic Information

Item Value
gene id LOC110486692
gene name LOC106606873
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 49530771 ~ 49533590 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558470.2
AGAGGTCGCTCTAAAATCGTACTTCACCATTTTTTTGTAAACAGAATGAAAGATGGCGGAGTCAGGGGAACCCAAGGCAACCTGtacttttttatttaaaaaatctacCAAAAAATGCAACGCTAGGAAGAGAAAAGCCAGTGACAGCGATAAAGATGGCAACAGTGACGAAGACAAGAATGCCGTTGTCAGAAAAGAAAAAAAGACGGGTTCAGCAAACCCTATGATTCAAAGGACAaaaaaagtagagagagaggaggtgtcaTCTGCTGAAAGTGAcgaggagaaagaaggaaagaaagtcaCTGTCGCTTACAAGTCCACACGGTCAGCAAAACCAGAGGGGCCAGATGACATGGGAGCAACTGCAATCTATGAGCTGGACACAGCAAAGGACAATGATGCACAGGCCATCTTTGAGAGGAGTCAGAAGATCCAGGAGGAGCTGACCGGTAAAGAGGATGATAAGATCTACAGAGGAATGAACAACTACAAAAAGCACATCAAGCCCAAAGACTCCACCATGGGAAATGCATCCTCTGGCATGGTCAGGAAGGGCCCAATCCGGGCCCCAGAGCACCTGAGAGCCACAGTGAGGTGGGACTACCAGCCAGACATCTGTAAGGACTACAAAGAGACTGGCTTCTGTGGCTTTGGAGACAGCTGCAAGTTCCTCCATGACCGCTCAGACTACAAACATGGCTGGCAGATTGAGAGGGAGCTGGACGAGGGGCGCTATGGGGCCAACGATGATGAGAACTACGAGGTGAGCAGTGACGAGGAGGACATGCCCTTCAAATGCTTCATCTGCCGAGAGTCCTTTAAGAACCCCGTCATCACCAAGTGTCGGCACTACTTCTGTGAGACCTGTGCTCTTCAGCACTACCGCAAGTCCCAGCGCTGCTATGTATGTAACGTCCAGACCAACGGCGTCTTCAACCCAGCTAAAGAGCTGGCAGCCAAGATCGCCAAACACCAAGCCATGCTAGACCAGCCACCCTCTGATGAAGAAGATTAGCAACCTACTGTAAATACAGTACCTGTCCAATTTCATCTGTGTCGGTTGTCCACTGTGTTTCATTGTCAAGCCTTCCGGAATAAAACTTGCTTTTTAAATA

Function

NR:

description
PREDICTED: RING finger protein 113A-like

GO: NA

KEGG:

id description
K13127 RNF113A, CWC24; RING finger protein 113A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558470.2 True 1118 mRNA 0.48 10 49530771 49533590

Neighbor

gene id symbol gene type direction distance location
LOC110486688 LOC106601605 coding downstream 8249 49515050 ~ 49522522 (-)
LOC110486687 LOC106601611 coding downstream 25952 49486817 ~ 49504819 (-)
LOC110486686 map3k3 coding downstream 45246 49467766 ~ 49485525 (-)
LOC100136168 LOC106585555 coding downstream 74492 49448242 ~ 49456279 (-)
kcnh2 kcnh2 coding downstream 101420 49388158 ~ 49429351 (-)
LOC118938314 NA coding upstream 3979 49537199 ~ 49544276 (-)
LOC110486698 LOC106601594 coding upstream 297477 49831067 ~ 49853671 (-)
LOC110486699 LOC106601618 coding upstream 437132 49970722 ~ 50040333 (-)
si:ch211-214j24.15 LOC106606868 coding upstream 525444 50059034 ~ 50067398 (-)
LOC110486710 LOC106601657 coding upstream 589600 50123190 ~ 50127201 (-)
G1183624 NA non-coding downstream 6605 49523584 ~ 49524166 (-)
G1183620 NA non-coding downstream 18757 49511738 ~ 49512014 (-)
G1183609 NA non-coding downstream 57015 49473432 ~ 49473756 (-)
G1183605 NA non-coding downstream 68034 49462499 ~ 49462737 (-)
G1183641 NA non-coding upstream 36384 49569974 ~ 49570178 (-)
G1183630 LOC106601597 non-coding upstream 38128 49571718 ~ 49577233 (-)
G1183629 NA non-coding upstream 46704 49580294 ~ 49663941 (-)
G1183653 NA non-coding upstream 73869 49607459 ~ 49632702 (-)
G1183728 NA non-coding upstream 181322 49714912 ~ 49715441 (-)
setd1a LOC106585476 other downstream 173557 49346540 ~ 49361234 (-)
LOC110485205 LOC106597701 other downstream 553363 48959315 ~ 49053966 (-)
LOC110486656 syt3 other downstream 594314 48875671 ~ 48936482 (-)
G1183337 NA other downstream 862689 48667788 ~ 48668082 (-)
G1183706 NA other upstream 151748 49685338 ~ 49688456 (-)
G1184986 NA other upstream 1093057 50626647 ~ 50628539 (-)
LOC110485208 LOC106606837 other upstream 1223048 50732097 ~ 50824433 (-)

Expression


Co-expression Network