LOC110486710 (LOC106601657)


Basic Information

Item Value
gene id LOC110486710
gene name LOC106601657
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 50123190 ~ 50127201 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558499.2
gaAAGCACTAACCGACCTACGTGCTGGTGGCGTAACGTCATCTGTGTTTATGTGGCCCTCTACTCCAGTTTTATTATCGGGGCTGTGGCTAAATTAGCATGGTAGCATGCCGTCAAACATGATTTGACTACATAGCAGacacaaaggACAGATGGCGGTGTGTGCACTGACAATGGACGGGATGGGAGACGAGGTGGCTGCAGTAAGCGGTGTGTTACTCCTGGTCTTGGCCTTGGTCCTGGCTTGGCTCTCCACGCAAGTGGCAGATCGGGGAGACCACATCCTGAGCACCATTCTTACAGTCGGTGCCCACGCCTCTCTAATCGGGCTGGGGGGCCATGAGAGTTACAGTGGAGGGCCACCCAGTGCAGACACCCCAGAGCAGCAAACACCTCCACCCTCCCAGGAGAACAAGCCAGAGGAGGGGGAGCCTGGGTCTGAGAGGGAAGATGGTGAGATAACAGGAGAGGGGACTGCAGGGGCTGGAGTTGACCTGCTGTTGAATATCCAGGGGAAGAAACCTCAGACATACcagcctgatgatgatgatgaagatgatgaggaagaggaggactaTGAGGAAGAAGACAAGGTTCAGAAGCTGAGCCCAGGGGTCTCCTGCACCAGCATCACGGTTCGTTTGAAGTTCCTGAATGACACAGAAGAGGTGGCAGTCCTGAGTCCCCAGGATACAGTGGGTCTACTGAAGAGTAAGCACTTCTCAGGGCGGGAGCGTCAGATCAAGTTGATCTACCAGGGCCAGCTGCTTCAGGATCCCAAACGGACTCTGCTCTCCCTCAACATCTCTCACAACAGTGTGATCCACTGCCACGTGTCCCAGGTGCTGCGGGAGGCCAGCCCAGAGGAGGCAGCTCGCTCTGGGGCTAGTGGGGGAATCAGGGCTGCAGGCCTGGCTCTAAGCACCAGCAGCCTGGTGGTGCCTGTGTTTGTGGTGATGTTAGCCGTGGTCTGGTACTTCCGCATCAACTACCGTCAGTTCTTCACAgcccctgctaccatctccctGGTGGGAGTCACTGTGTTCTTCAGCTTCCTCATCTTTGGAATGCACAGCCGGTgagcaggagaggaggcagaatGGAAGGGCCCTCATCTGGGCAGGAGAATGAGAGGGAAAAACAACTGTGTCAGGAGGATGAATGGAGTCAGGGGGCCTCTCTGCCTTAGACACCATAGAGCTCAACTGGAATCCTAAGAGTGGGTGTGCCTCTGTTTGTGCATGCACCAGCAAATAGCATAATATGAGATTGATTGTATGTGCAGAGATTCAAGTTATCTGGAATGTGTGTTTGTTAGTATGAAGCAGAGATAATAATGAGCGGTAATTTTGCTTCTCAGAAAAACATTGAGTGGGTCCAGCTCCTCCTGGTCCTTTATAGGGCAGAACCATCAGCATCACACCCAGGACCACAGGCTGCTTGGTCCACTGTGTCAGCAACATCTTCTGGCCAGTTTGGCTTCACATAACCTGTTCTGTGTTAGGTTGCTCTCAGAAATTAGGGtctctattcaatcagatccgctttagccgACATCCGTATAGAAGTTGTGGGAGGTGGAACAGTGTTAGTGCTGTCAATCCACTGAGGTATAAGAACTGGAGACTGTGTCAAAGATGTCCGTCCGCCTTTTGTTTTCAAGGATATCTACTCACGTTCGCATACGCCAATTCATGTCCGTCTATATCCGGGTTGAATCTAGTTTATACAGATCAACATCACATGCACACTAGCACTCAGTGTGCACAGCAGCGCAGACATCATCCAAAAACATGGCAGACTGATGAATATAAAATGTTGGCATCAGCTACAAATATTTGAATAATTCAATGGATGATTTGTGCACAAAGGTGATGACCTAAGTGTCTTATTATGAATTTTGAAATCTGACTTATCTATGTGGCCGTGTATGGAAATTGTCATTCTAGGCTGAGCGTCAGTTAAACTGCAAAACTGTAGCAGTCGAAACCGTGCTTTGCTTTAAGTCAATACCACggagccttgtttacaagttcgaacaatggaatgtgagatgtaatctacacctcgatgAGGCTGATTAGAAAtctttattttaattattttcaACTTGAGCGTAATTTCTATCTAGCCTCCACGTTCTCGTTCTGAATTTCTAATGCAAGTAGGACAGGTGTGGCTTTGTGATAAAGAGCAGCCActcaccgatttgacagctccaacgcaGGTGCACCGCCAGAAATCAGCTATCGCCGGTTAacacttgatctgattgaatctagacCTAGGATAATGCATCTCTTCACATCATGGCCACATACTCTTTTCATTATATACACGTTAACGTTCCAGAAACGTTTAGTCTTTTTGTAGTACGTGTTTGAACGAGCAATTCATTTCCTCAGTTGCAACGGAAACAAAATGAAGATTATACAACTAGACTTGACTCTAGAGCAACTTTGAAACCACTCACCATGGAGTGGTGGTTATATTTCTACTTTCTTTCCAGTTCTTTGGGAATGAGCTTTCACCGTAGTTATTGTGGACTGTAACAACTGCCTTATTGCAAGGCAAAACAGTTTAAGGATTTTTGTTGCTTGAATTACTCTACGCTAATATCATTAGTTATTTTAAACCATGTAAGTTCATGCATGAAAATAAGCAACATGTTTGGTTTAGAAAatactgtaaatatgtatttactgtacatAGAATGAATGGGATGAAACCACATCGGACACATCAGGACTTCTGTTGGGGAATTTAACATAGATGAGAGGGAAAATCTCTTTATCCCTTAAGTTTGATTGTTTTCCTCTGGCTTCAGATTTAAAGACATTCAAACCAATCAGTCCCTGTGTAAAGAGGGAGTATGTCTGATATTGGACAAAATGACAGAACGCAAGAAATCTGAATGACACTTAATTTTACTCAGACAAAGAAACCTCTGTACACTTGGGAAACTGAGATATAAAGAAAATCTAGCTGTGCGTCACATTAATATACAATTGACATatttgcacatgcacacacacgtgcatgaaaaaagttgtttttgttttgtgaagACACTTTCTATTGCGTCATTTGTCCACACTCATATTGTTCAGACACACCGATACACACAAATAAACAGTTACGCAGCA

Function

NR:

description
transmembrane and ubiquitin-like domain-containing protein 1

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K23340 TMUB; transmembrane and ubiquitin-like domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558499.2 True 3145 mRNA 0.46 3 50123190 50127201

Neighbor

gene id symbol gene type direction distance location
si:ch211-214j24.15 LOC106606868 coding downstream 55792 50059034 ~ 50067398 (-)
LOC110486699 LOC106601618 coding downstream 82857 49970722 ~ 50040333 (-)
LOC110486698 LOC106601594 coding downstream 269519 49831067 ~ 49853671 (-)
LOC118938314 NA coding downstream 581441 49537199 ~ 49544276 (-)
LOC110486692 LOC106606873 coding downstream 589600 49530771 ~ 49533590 (-)
LOC110486707 asb16 coding upstream 354 50127555 ~ 50130302 (-)
LOC110486713 NA coding upstream 503804 50631005 ~ 50633690 (-)
LOC110486716 LOC106601616 coding upstream 520233 50647434 ~ 50653284 (-)
LOC110486719 LOC105013088 coding upstream 562981 50690182 ~ 50697090 (-)
LOC118938085 NA coding upstream 592611 50719812 ~ 50730095 (-)
G1184672 LOC106606818 non-coding downstream 18124 50103579 ~ 50105066 (-)
G1184671 LOC106601648 non-coding downstream 28079 50092216 ~ 50095111 (-)
G1184669 NA non-coding downstream 30120 50092560 ~ 50093070 (-)
G1184668 LOC100136769 non-coding downstream 38474 50079143 ~ 50084716 (-)
G1184661 NA non-coding downstream 58002 50048786 ~ 50065188 (-)
G1184782 NA non-coding upstream 177636 50304837 ~ 50305278 (-)
G1184896 NA non-coding upstream 367773 50494974 ~ 50495465 (-)
G1184958 NA non-coding upstream 475643 50602844 ~ 50603081 (-)
G1184963 NA non-coding upstream 480419 50607620 ~ 50607896 (-)
G1184964 NA non-coding upstream 480768 50607969 ~ 50608323 (-)
G1183706 NA other downstream 434734 49685338 ~ 49688456 (-)
LOC110486687 LOC106601611 other downstream 619180 49486817 ~ 49504819 (-)
setd1a LOC106585476 other downstream 765976 49346540 ~ 49361234 (-)
G1184986 NA other upstream 499446 50626647 ~ 50628539 (-)
LOC110485208 LOC106606837 other upstream 629437 50732097 ~ 50824433 (-)
G1185046 NA other upstream 653064 50780265 ~ 50781858 (-)
G1186080 NA other upstream 1194599 51321800 ~ 51323931 (-)
G1186075 NA other upstream 1225108 51352309 ~ 51373954 (-)

Expression


Co-expression Network