LOC110486698 (LOC106601594)


Basic Information

Item Value
gene id LOC110486698
gene name LOC106601594
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 49831067 ~ 49853671 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005035579.1
aaaCGTCAATGCCCGTATACGATTCCTTGTCAGTCCACACACATATGAGCAACGCCAAGGATTCCATTCATCAACTCGGCTTCACCCCGGTGGATATACACTGATACAGCCGGACAGATATCATCTACTTCATTCTCACTCACACGGTTGCAGGTTGAGCAGGAATTGCATACACTATTTTTCGTGGATGGTAATGCGGTACATTCTCATGGATTTCCAATGTTCTAGTGATTGGACTCAAACCCGGGAAAAGTAAAAGGACAGGTGCGTGTTGAAGGAGCCCAGGTGTAGCAGCTGAGCCTACGTTGGACATGGGACCCTATCTTAGCTTTGGGGAATACAGTGCGGAAGGAATAGCGTCTTCGTGAAGGAAAGCTGACTTCGGGCTGAAGCGGGAATCTGAGGCATTGCGCGCGGCAGAAAAATGCGTTCCAACCACGGCTTTATCTTGCTTCTCCTTAACGGAACAGCGTGCTTGCTGGCCCTGGGTCAAGAAGATGACTCTCCAAGCCCCAAGAGCTCCTCAGCAGACGGGTCGTCCTCTAAGACGGTGGGTCTCCTGGGGAGTCAGACTCCCCTTTCCCCCCTGAGTCGCTGGATGCTCCAGAGTAAAAGTCGGGCAGCCAATGCCACCTCCCTGGAGCTGCCCTACCGCTCACCCATACCCTTCTCCAAGCAGGAGTTCTGGGAGATGCTGGGTAGTGACCTGATGAAGCCagacacctcctcttcctcccgcgTCAAACGCCGGCCCATCGTCAAGACGGGCAAGTTCAAGAAGATGTTTGGCTGGGGAGACTTTTACTCTAATATCAAGACTGTGCGCCTCAACCTGCTGATTACCGGCAAGATCGTAGACCATGGCAACGGAACGTTCAGCGTCTACTTCCGCCACAACTCCACGGGCCAGGGCAACATCTCAGTCAGCCTGGTGCCGCCGGTCAAGGCGGTGGAGTTTGACCTGGAGCGCCAGAGCGTGGTCTACCCCAAGGACTCTAAGATCTTCAACTGCCGCGTGGACTATGAGAAGGTGGACCGCAGCAAGCGCACGTCGCTCTGCAACTACGACCCGTCCAAGACCTGCTTCCAGGAGCAGACACAGAGCCATGTCTCCTGGATCTGTTCCAAGCCCTTCAAGGTCATCTGTATCTACATCTCCTTCTACAGTACAGACTACCGCCTGGTCCAGAAGGTCTGCCCGGACTACAACTACCACAACGAGATGCCCTACCTGCCCTCGGGCTAGAGGGGGACACacaggagggtgagaggagggacgaGGGGAGGAGTGACTCTGTAGGAGTCCAGCTCGGAGCTCAACTGGCTAATCTCTCGGCTTAACAGTGAGGCCAACTGAACCCTCACAGTGAGAACACACACATGCcggcgcaaacacacacacatcgcaGTGCTACAGAgacatgaaccccccccccccccccc
>XM_036941404.1
aaaCGTCAATGCCCGTATACGATTCCTTGTCAGTCCACACACATATGAGCAACGCCAAGGATTCCATTCATCAACTCGGCTTCACCCCGGTGGATATACACTGATACAGCCGGACAGATATCATCTACTTCATTCTCACTCACACGGTTGCAGGTTGAGCAGGAATTGCATACACTATTTTTCGTGGATGGTAATGCGGTACATTCTCATGGATTTCCAATGTTCTAGTGATTGGACTCAAACCCGGGAAAAGTAAAAGGACAGGTGCGTGTTGAAGGAGCCCAGGTGTAGCAGCTGAGCCTACGTTGGACATGGGACCCTATCTTAGCTTTGGGGAATACAGTGCGGAAGGAATAGCGTCTTCGTGAAGGAAAGCTGACTTCGGGCTGAAGCGGGAATCTGAGGCATTGCGCGCGGCAGAAAAATGCGTTCCAACCACGGCTTTATCTTGCTTCTCCTTAACGGAACAGCGTGCTTGCTGGCCCTGGGTCAAGAAGATGACTCTCCAAGCCCCAAGAGCTCCTCAGCAGACGGGTCGTCCTCTAAGACGGTGGGTCTCCTGGGGAGTCAGACTCCCCTTTCCCCCCTGAGTCGCTGGATGCTCCAGAGTAAAAGTCGGGCAGCCAATGCCACCTCCCTGGAGCTGCCCTACCGCTCACCCATACCCTTCTCCAAGCAGGAGTTCTGGGAGATGCTGGGTAGTGACCTGATGAAGCCagacacctcctcttcctcccgcgTCAAACGCCGGCCCATCGTCAAGACGGGCAAGTTCAAGAAGATGTTTGGCTGGGGAGACTTTTACTCTAATATCAAGACTGTGCGCCTCAACCTGCTGATTACCGGCAAGATCGTAGACCATGGCAACGGAACGTTCAGCGTCTACTTCCGCCACAACTCCACGGGCCAGGGCAACATCTCAGTCAGCCTGGTGCCGCCGGTCAAGGCGGTGGAGTTTGACCTGGAGCGCCAGAGCGTGGTCTACCCCAAGGACTCTAAGATCTTCAACTGCCGCGTGGACTATGAGAAGGTGGACCGCAGCAAGCGCACGTCGCTCTGCAACTACGACCCGTCCAAGACCTGCTTCCAGGAGCAGACACAGAGCCATGTCTCCTGGATCTGTTCCAAGCCCTTCAAGGTCATCTGTATCTACATCTCCTTCTACAGTACAGACTACCGCCTGGTCCAGAAGGTCTGCCCGGACTACAACTACCACAACGAGATGCCCTACCTGCCCTCGGGCTAGAGGGGGACACacaggagggtgagaggagggacgaGGGGAGGAGTGACTCTGTAGGGTGAGGGGCCACCAGATTGAGCTGGATTCAACTTTTTATGTAATTTGCTGCAACGCCTCACCAGACAACCCCTCGCTGTAGCCAGACTACTGTACCCTGTAAAAACGTATATATGCAAAACATACAGTATGCACAGTGAGGCATTGACATTTAGAGTGCTGTAATGAAGCATTCATCGACAGAAACAGTAGTAACTTGCACGCCTAACATCATCACACACGTTTACCTCAACTCAAACCTCTAATTTCGCTACCTACTTTGCTAAATACAGAAAACACCTACAAACATCTATGAATGTTTTCGTGAACTACTGCACACTGTCATTCAGGCGAGGTAGCACTCTACTTTCAAAAGGGCATCTTCCATTTGTTTCTGTATGGACCCTTGTCCCAATCTTTCCCAATGCTCCCatatcccacccctctctctccccacccctatGTCATCCCGATAGgctatcccacccctctctctccccacccctatGTCATCCCGATAGgctatcccacccctctctctc
>TU1350091
GTCAGACTCCCCTTTCCCCCCTGAGTCGCTGGATGCTCCAGAGTAAAAGTCGGGCAGCCAATGCCACCTCCCTGGAGCTGCCCTACCGCTCACCCATACCCTTCTCCAAGCAGGAGTTCTGGGAGATGCTGGGTAGTGACCTGATGAAGCCagacacctcctcttcctcccgcgTCAAACGCCGGCCCATCGTCAAGACGGGCAAGTTCAAGAAGATGTTTGGCTGGGGAGACTTTTACTCTAATATCAAGACTGTGCGCCTCAACCTGCTGATTACCGGCAAGATCGTAGACCATGGCAACGGAACGTTCAGCGTCTACTTCCGCCACAACTCCACGGGCCAGGGCAACATCTCAGTCAGCCTGGTGCCGCCGGTCAAGGCGGTGGAGTTTGACCTGGAGCGCCAGAGCGTGGTCTACCCCAAGGACTCTAAGATCTTCAACTGCCGCGTGGACTATGAGAAGGTGGACCGCAGCAAGCGCACGTCGCTCTGCAACTACGACCCGTCCAAGACCTGCTTCCAGGAGCAGACACAGAGCCATGTCTCCTGGATCTGTTCCAAGCCCTTCAAGGTCATCTGTATCTACATCTCCTTCTACAGTACAGACTACCGCCTGGTCCAGAAGGTCTGCCCGGACTACAACTACCACAACGAGATGCCCTACCTGCC

Function

NR:

description
neurexophilin-1-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005035579.1 False 1443 mRNA 0.55 3 49831067 49853671
XM_036941404.1 False 1821 mRNA 0.52 2 49835078 49853671
TU1350091 True 670 TUCP 0.57 1 49835663 49836332

Neighbor

gene id symbol gene type direction distance location
LOC118938314 NA coding downstream 289318 49537199 ~ 49544276 (-)
LOC110486692 LOC106606873 coding downstream 297477 49530771 ~ 49533590 (-)
LOC110486688 LOC106601605 coding downstream 308545 49515050 ~ 49522522 (-)
LOC110486687 LOC106601611 coding downstream 326248 49486817 ~ 49504819 (-)
LOC110486686 map3k3 coding downstream 345542 49467766 ~ 49485525 (-)
LOC110486699 LOC106601618 coding upstream 117051 49970722 ~ 50040333 (-)
si:ch211-214j24.15 LOC106606868 coding upstream 205363 50059034 ~ 50067398 (-)
LOC110486710 LOC106601657 coding upstream 269519 50123190 ~ 50127201 (-)
LOC110486707 asb16 coding upstream 273884 50127555 ~ 50130302 (-)
LOC110486713 NA coding upstream 777334 50631005 ~ 50633690 (-)
G1183833 NA non-coding downstream 20 49830482 ~ 49831047 (-)
G1183815 NA non-coding downstream 4539 49826250 ~ 49826528 (-)
G1183814 NA non-coding downstream 5469 49825208 ~ 49825598 (-)
G1183791 NA non-coding downstream 30183 49800670 ~ 49800884 (-)
G1183785 NA non-coding downstream 36073 49793181 ~ 49794994 (-)
G1183882 NA non-coding upstream 35657 49889328 ~ 49889624 (-)
G1184592 NA non-coding upstream 58961 49912632 ~ 49915531 (-)
G1184598 NA non-coding upstream 72528 49926199 ~ 49926444 (-)
G1184639 NA non-coding upstream 157031 50010702 ~ 50012131 (-)
G1184640 NA non-coding upstream 160580 50014251 ~ 50014683 (-)
G1183706 NA other downstream 142611 49685338 ~ 49688456 (-)
setd1a LOC106585476 other downstream 473853 49346540 ~ 49361234 (-)
LOC110485205 LOC106597701 other downstream 853659 48959315 ~ 49053966 (-)
G1184986 NA other upstream 772976 50626647 ~ 50628539 (-)
LOC110485208 LOC106606837 other upstream 902967 50732097 ~ 50824433 (-)
G1185046 NA other upstream 926594 50780265 ~ 50781858 (-)
G1186080 NA other upstream 1468129 51321800 ~ 51323931 (-)
G1186075 NA other upstream 1498638 51352309 ~ 51373954 (-)
G1183835 NA non-coding upstream 1337 49837669 ~ 49837871 (-)
G1183842 NA non-coding upstream 13337 49849669 ~ 49849904 (-)
G1183844 NA non-coding upstream 15668 49852000 ~ 49852202 (-)

Expression


Co-expression Network