XLOC_030793


Basic Information

Item Value
gene id XLOC_030793
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 5298861 ~ 5301748 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00061926
aagcgattagttgactttactttaaaaattgagtaaactcttttaaagcgattagttgactttactttaaaaattgagtaaactcttttaaagcgattagttgactttactttaaaaattgaataaactcttttaaagcgattagttgactttactttaaaaattgagtaaactcttttaaagcgattagttgactttactttaaaaattgaataaactcttttaaaagcgattagttgactttactttaaaaattgagtaaactTTTAAAATCGATTACTTGAAATTTAAAAGGGAGTaaacttttaaagcaattaattgACTTTTAAAGCAAGTAAAACTGTTTTATAGTGAAAATTGACTTGTGagttaaagcaattagttgaattTACTTCAGGTGAATGAactcttttaaagtgattaggtGACTTCACTTAAAGTGAGTCAGTTAACTCTTTAAAGCGATTAGGTGAATAAtcttaaaaagtaagtaaagcaattagttgactttacttgaaaaaGCGagttcttttaaagtgattagttaaatttacttttaaaaagtgagtaaacctgtcagttttaaatttattagttgactttactttaaaaagtgagcaaaCCCCCTTTTTTTGCAATTGGTCAACTTTACTTTTCAAAGTTAATAAACTCTTTTAAAGTGCTTAGTTGACTTCACTTTTGAAAAAGTGAATAACCTCTTTTAATGCATTAAGTTGACTTTACCTAAAGTgagaaaaatgatttaaaataggtTGAATTTCCTTAAAGcaagtgcacttttaaaaattgattagttgacttaagttGAATAAACTCTTTTAAAGAGATTGGTTGACTACTTAAAGCGAGtatcttttttaaaatgattagttgatttAAAGTGAGTGAAAATTGATTATATGACTATTTAAAGTGAATAGattcttttaaagcgattagttgactacaTAAAGCAAGTAAACTCTTtaaaagagattagttgactttactaaaaGAGAATAGactcttttaaagtgattaattgATTACTTAAAGTgagaaaactttttaaaatcaactagttgactttactcaaatggagtgAGCTCTTTTAAAGCAACTAGTTGACTTTATATATTAAAAAGCAAGTAAAACCATTGCCTtacaattaagtaaataaaatatatgcataactacaaaataaataagtcaatCTAACTATTTCAAGTTACATTGGATTTAcccactttttaaagtaaaatcaatttgtctcttttattttatttttaggcaacaggtttaaaaaaaaattaagtataatAACTGATCcctttttacagtgcacagtaCAGTATGTTGTACGTATGtcgcatttttttattcatagatcaccaaactaatttttgaaatggtatttttaatgatttaacatGATCATTGATGTTATTGATTATAAATGTCATTGATATTTTAGAATTACCCAGACTTTGTTAAATCACAACATATGAAATAATACTGCAGTCATGCATATGCCAAATCAtgtatttatcatatttattatttaaaagtggctTCAGAGGTAAAATACTATTGATAATAAATGAATTGACTTCATGTGTATAATTTCAGGTAGcgtaaaaacaatgttttacttAGAAATTGATAGTAAATTTGATTCAACGTTACAAAGAAATGGAAACTAGTGCGTTTGAATTAAACATGACATTGTAAAATTGAAACCGTGATATTAGTCCAGATTAGTTTATAATTCCTGGCTAAACAATGTTTTATTATGTCTATGGAGAAAATGCATGGGAATTTTACTTCTGAAGCCAATTGTTCAGCTCTATTATATCAGTTACAGtcacaattattaacatctgcaaTATTTTATATGATCTACTTCGCTTTGCAATCCAAATATATGTATGATTTATTGAGCAAATAATCAAAGAATCAGCACACATACTGTATCTGTACATTAAACAAAGACCATTTTCGTTTGTTATTCTTTAAGTTCCTCACTCATGTTCTGTATGACAGTCTgttcatttttcatttaaattactttcattcattcttcaGTCGGGTATTATataatttgcatatgcattttaagacactgtcatattttaaaaatgataaatgctCTAACGTATTAACAGAATTTACACTGCGAGCAACTCTATGAAGAATAATTCATGTAATATGACTAGCTTTTGATAAAGGAAATACTTGTTGTTTCTGGCCAAAAATGGTGTTTCAATAAACATTTTCAATTGAGA

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0099643 signal release from synapse biological_process
GO:0050877 nervous system process biological_process
GO:0048488 synaptic vesicle endocytosis biological_process
GO:0043010 camera-type eye development biological_process
GO:0048513 animal organ development biological_process
GO:0007269 neurotransmitter secretion biological_process
GO:0007275 multicellular organism development biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0048856 anatomical structure development biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0099504 synaptic vesicle cycle biological_process
GO:0048880 sensory system development biological_process
GO:0036465 synaptic vesicle recycling biological_process
GO:0003008 system process biological_process
GO:0099003 vesicle-mediated transport in synapse biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0001654 eye development biological_process
GO:0140238 presynaptic endocytosis biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0007423 sensory organ development biological_process
GO:0150063 visual system development biological_process
GO:0030133 transport vesicle cellular_component
GO:0043005 neuron projection cellular_component
GO:0030426 growth cone cellular_component
GO:0030427 site of polarized growth cellular_component
GO:0043025 neuronal cell body cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0045202 synapse cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0033267 obsolete axon part cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0044297 cell body cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0150034 distal axon cellular_component
GO:0098793 presynapse cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00061926 True 2285 lncRNA 0.26 2 5298861 5301748

Neighbor

gene id symbol gene type direction distance location
XLOC_030792 mvb12ba coding downstream 55750 5171254 ~ 5243111 (-)
XLOC_030791 NA coding downstream 140688 5156399 ~ 5158173 (-)
XLOC_030790 lmx1ba coding downstream 151525 5032833 ~ 5147336 (-)
XLOC_030789 BX511196.1 coding downstream 356149 4942598 ~ 4942712 (-)
XLOC_030788 zbtb43 coding downstream 367595 4921092 ~ 4931266 (-)
XLOC_030794 pbx3a coding upstream 1184 5302932 ~ 5394468 (-)
XLOC_030795 NA coding upstream 198055 5499803 ~ 5504425 (-)
XLOC_030796 rabl6a coding upstream 312872 5614620 ~ 5655839 (-)
XLOC_030797 CABZ01075628.1 coding upstream 365116 5666864 ~ 5669879 (-)
XLOC_030798 TNC coding upstream 406828 5708576 ~ 5831037 (-)
XLOC_030787 NA non-coding downstream 391251 4864870 ~ 4907610 (-)
XLOC_030786 CU915770.2 non-coding downstream 564719 4714732 ~ 4734142 (-)
XLOC_030785 CU915770.1 non-coding downstream 601494 4685675 ~ 4697367 (-)
XLOC_030799 NA non-coding upstream 740318 6042066 ~ 6050725 (-)
XLOC_030800 NA non-coding upstream 896332 6198080 ~ 6198325 (-)
XLOC_030801 NA non-coding upstream 1009745 6311493 ~ 6312518 (-)
XLOC_030804 NA non-coding upstream 1169277 6471025 ~ 6472754 (-)

Expression


Co-expression Network