XLOC_030815 (bmpr1ba)


Basic Information

Item Value
gene id XLOC_030815
gene name bmpr1ba
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 7488064 ~ 7712224 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00059952
CCAATGTTTTGGACTCTATGCTGCTGAGGAATTCTGGGAAGGTGGAAGAGCGTCGGGAGACAGGAAGTGATGCGCCAGCTTTACCTCAGCGCTTCCTTTGGTGTTACTGTTATCATCACTGTCCGGAGGACTCCACGAATAACACGTGCAGgaCAGACGGCTACTGCTTCACCATGGTGGAGGAAGAGGGTGGAGCGGCTGTAGTGACGTCAGGCTGTCTGGGTCTGGTGGGATCAGAGTTTCAGTGCCGAgaCACAGGGAACTCCAAGCAGCGGCGGGCGCTCGAGTGTTGTACAGATCAAGACTACTGTAACCGAGACCTGCACCCAACACTGCCTCCGTTACGCACACCTAgTTATGTGGTTGGAGACATTCATCATATCGCTCTGCTCATCTCAGTGAGCGTCTGTAGCTTCATCCtcaccttcatcatcatcttctgttACTTCAGATATAAGCGTCATGAATTAGCACCGCGCTACAGTCTCGGTCTACATCCAGACGAAAGCTTCATTCCTGCTGGAGAATCTCTGCGGGATCTCATAGAGCAATCCCAGAGCTCCGGTTCTGGCTCAGGACTCCCTCTACTGgTGCAGCGCACTATAGCGAAGCAGATCCAGATGGTGACACAGATCGGGAAGGGTCGCTATGGAGAAGTGTGGATGGGAAGATGGAGAGGAGAGAAAGTAGCTGTGAAAGTGTTTTTCACCACAGAGGAGGCCAGCTGGTTCAGGGAGACCGAGATCTATCAGACCGTCCTCATGAGACATGACAATATACTGGGATTTATAGCGGCTGATATTAAAGGTACAGGCTCGTGGACGCAGCTCTACCTGATCACAGACTATCATGAGAACGGCTCTCTGTATGACTATCTGAAGTGCACCACGCTGGACAGCAGAGCCATGCTGAAACTTGCCTATTCCTCCGTCTCGGGCCTTTGCCATTTGCACACCGAGATCTTCGGCACGCAGGGAAAACCAGCCATCGCCCACCGAGATCTGAAGAGCAAAAACATCCTGGTCAAGAGAAACGGAGCTTGCTGCATCGCTGACCTCGGCCTCGCCGTCAAGTTCATCAGCGACACTAATGAAGTGGACATCCCTCTGAACACTCGTGTGGGAACCAAACGCTTCATGGCTCCTGAAGTTCTGGACGAGACACTGAACAGGAACCATTTCCAGTCCTACATCATGGCAGACATGTACAGCTTTGGCCTCATCCTGTGGGAGATCAGCAGACGCTGCGTCACCGGAGGTATAGTAGAGGAGTATCAGCTGCCGTATCATGATCATGTTCCCAATGACCCGTCATATGAAGACATGAGAGAGGTGGTCTGCATCAAGAGGATACGACCCTCCTTCCCCAACCGCTGGAGCAGTGATGAGTGTCTCCGACAGATGGGGAAGCTCATGACAGAGTGTTGGGCTCATAATCCGGCCTCTCGTCTCACAGCCCTCCGCGTTAAAAAGACTCTGGCCAAGATGTCTGAATCCCAGGACATTAAAGTCTGAGAGCAATTCTCCACCCAAACCCTGAACTCACAGCAACACTCACACACTTGCTGGAAAATGCCACAGATCTCCTTCAGTGAGCAGATCTCAGCGCGGGACGTCCTGATCAAAGATATCCAGCCGTGAGGATGAGCTTGCGGGACGCTAAAAGTGGTAACACAGCAGGAGAAGTTGACGCAGAACTCAAGTTTTTCTGTATTTGAAAATGATTTTGTTGAATCGTGTCAGATTTCAGAGAACAATGGTTGACGTTCAAGTCATAGGAGCTGCGGTTTTccctccttttttatttttttggtgggcTGTGCcttatttattgtgtaaatatagATGAAGTTTTGAGAGCTGCATTATTGTgcttaaataaatgttgtaaaaacACTGAA
>TCONS_00059953
CTCACGGACACCAAGCAGCTTTACAACAACTCGCGGACACTTTCACCTCTCAACCGGTGATCTGCATTTTGATTGGCTGCAGGCCGGTTATGGAGCATCTATATATTAGAAAGATTTTCAGTGATCGAGGATTGCTGGTTAATATGAGCTAATGCACGCTGGACAGCGATACCCGCTCAGTCGGTGTGAAGCTGTGATTGAGGCTGCTGTGGGGTGTGCAGTTTCTCACATTCTgtagaggacacacacacatagagctgAGGGATTCTCTGGCTCACTGGAGTTCTGCAGACGCACGATGGATCTCTATAGGAGCTGCTTGCGTTGGCTGTGTGTGCTGCTCATTGGGCTTCTGGGACTCGTGGAGGAAAACTTGGCCAATGTTTTGGACTCTATGCTGCTGAGGAATTCTGGGAAGGTGGAAGAGCGTCGGGAGACAGGAAGTGATGCGCCAGCTTTACCTCAGCGCTTCCTTTGGTGTTACTGTTATCATCACTGTCCGGAGGACTCCACGAATAACACGTGCAGgaCAGACGGCTACTGCTTCACCATGGTGGAGGAAGAGGGTGGAGCGGCTGTAGTGACGTCAGGCTGTCTGGGTCTGGTGGGATCAGAGTTTCAGTGCCGAgaCACAGGGAACTCCAAGCAGCGGCGGGCGCTCGAGTGTTGTACAGATCAAGACTACTGTAACCGAGACCTGCACCCAACACTGCCTCCGTTACGCACACCTAgTTATGTGGTTGGAGACATTCATCATATCGCTCTGCTCATCTCAGTGAGCGTCTGTAGCTTCATCCtcaccttcatcatcatcttctgttACTTCAGATATAAGCGTCATGAATTAGCACCGCGCTACAGTCTCGGTCTACATCCAGACGAAAGCTTCATTCCTGCTGGAGAATCTCTGCGGGATCTCATAGAGCAATCCCAGAGCTCCGGTTCTGGCTCAGGACTCCCTCTACTGgTGCAGCGCACTATAGCGAAGCAGATCCAGATGGTGACACAGATCGGGAAGGGTCGCTATGGAGAAGTGTGGATGGGAAGATGGAGAGGAGAGAAAGTAGCTGTGAAAGTGTTTTTCACCACAGAGGAGGCCAGCTGGTTCAGGGAGACCGAGATCTATCAGACCGTCCTCATGAGACATGACAATATACTGGGATTTATAGCGGCTGATATTAAAGGTACAGGCTCGTGGACGCAGCTCTACCTGATCACAGACTATCATGAGAACGGCTCTCTGTATGACTATCTGAAGTGCACCACGCTGGACAGCAGAGCCATGCTGAAACTTGCCTATTCCTCCGTCTCGGGCCTTTGCCATTTGCACACCGAGATCTTCGGCACGCAGGGAAAACCAGCCATCGCCCACCGAGATCTGAAGAGCAAAAACATCCTGGTCAAGAGAAACGGAGCTTGCTGCATCGCTGACCTCGGCCTCGCCGTCAAGTTCATCAGCGACACTAATGAAGTGGACATCCCTCTGAACACTCGTGTGGGAACCAAACGCTTCATGGCTCCTGAAGTTCTGGACGAGACACTGAACAGGAACCATTTCCAGTCCTACATCATGGCAGACATGTACAGCTTTGGCCTCATCCTGTGGGAGATCAGCAGACGCTGCGTCACCGGAGGTATAGTAGAGGAGTATCAGCTGCCGTATCATGATCATGTTCCCAATGACCCGTCATATGAAGACATGAGAGAGGTGGTCTGCATCAAGAGGATACGACCCTCCTTCCCCAACCGCTGGAGCAGTGATGAGTGTCTCCGACAGATGGGGAAGCTCATGACAGAGTGTTGGGCTCATAATCCGGCCTCTCGTCTCACAGCCCTCCGCGTTAAAAAGACTCTGGCCAAGATGTCTGAATCCCAGGACATTAAAGTCTGAGAGCAATTCTCCACCCAAACCCTGAACTCACAGCAACACTCACACACTTGCTGGAAAATGCCACAGATCTCCTTCAGTGAGCAGATCTCAGCGCGGGACGTCCTGATCAAAGATATCCAGCCGTGAGGATGAGCTTGCGGGACGCTAAAAGTGGTAACACAGCAGGAGAAGTTGACGCAGAACTCAAGTTTTTCTGTATTTGAAAATGATTTTGTTGAATCGTGTCAGATTTCAGAGAACAATGGTTGACGTTCAAGTCATAGGAGCTGCGGTTTTccctccttttttatttttttggtgggcTGTGCcttatttattgtgtaaatatagATGAAGTTTTGAGAGCTGCATTATTGTgcttaaataaatgttgt
>TCONS_00061512
TGCTGTTGATGATGTTGACGAGCTGAACTCATTTAATGTTGAACTGACACATCATTCAGACGGACTCACGGACACCAAGCAGCTTTACAACAACTCGCGGACACTTTCACCTCTCAACCGGTGATCTGCATTTTGATTGGCTGCAGGCCGGTTATGGAGCATCTATATATTAGAAAGGTGAGGAGTGAGGGTTGTTTTGATGGTTTGACTCCAGAGGCCTAAATTTGTTTGTGCCAATACACCATGATTTTGCCAACTGCT

Function

symbol description
bmpr1ba Predicted to enable SMAD binding activity and transforming growth factor beta receptor activity, type I. Acts upstream of or within BMP signaling pathway and determination of dorsal identity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be active in plasma membrane. Is expressed in several structures, including anterior neural rod; margin; nervous system; optic primordium; and ovarian follicle. Human ortholog(s) of this gene implicated in brachydactyly type A1D; brachydactyly type A2; and osteochondrodysplasia. Orthologous to human BMPR1B (bone morphogenetic protein receptor type 1B).

GO:

id name namespace
GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0071363 cellular response to growth factor stimulus biological_process
GO:0048263 determination of dorsal identity biological_process
GO:0030509 BMP signaling pathway biological_process
GO:0006468 protein phosphorylation biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0016310 phosphorylation biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043235 receptor complex cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0046332 SMAD binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0004675 transmembrane receptor protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0005025 transforming growth factor beta receptor activity, type I molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-991208-8 Predicted to enable SMAD binding activity and transforming growth factor beta receptor activity, type I. Acts upstream of or within BMP signaling pathway and determination of dorsal identity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be active in plasma membrane. Is expressed in several structures, including anterior neural rod; margin; nervous system; optic primordium; and ovarian follicle. Human ortholog(s) of this gene implicated in brachydactyly type A1D; brachydactyly type A2; and osteochondrodysplasia. Orthologous to human BMPR1B (bone morphogenetic protein receptor type 1B).

Ensembl:

ensembl_id ENSDARG00000104100

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00059952 False 1900 mRNA 0.50 10 7488064 7513082
TCONS_00059953 False 2265 mRNA 0.50 14 7488076 7712160
TCONS_00061512 True 261 lncRNA 0.45 2 7691875 7712224

Neighbor

gene id symbol gene type direction distance location
XLOC_030814 CU856253.1 coding downstream 56541 7431425 ~ 7431523 (-)
XLOC_030813 NA coding downstream 110659 7376982 ~ 7377405 (-)
XLOC_030812 CABZ01087502.1 coding downstream 288066 7198757 ~ 7199998 (-)
XLOC_030811 CABZ01087503.1 coding downstream 339657 7148291 ~ 7148407 (-)
XLOC_030810 CABZ01041961.1 coding downstream 558916 6929034 ~ 6929148 (-)
XLOC_030817 pdlim5a coding upstream 9793 7722017 ~ 7844265 (-)
XLOC_030818 NA coding upstream 12840 7725064 ~ 7725275 (-)
XLOC_030819 opn4xb coding upstream 141239 7853463 ~ 7897420 (-)
XLOC_030820 EGFLAM coding upstream 207654 7919878 ~ 7969760 (-)
XLOC_030821 FP016143.1 coding upstream 260535 7972759 ~ 7972879 (-)
XLOC_030808 CABZ01074478.1 non-coding downstream 956882 6531067 ~ 6531182 (-)
XLOC_030824 NA non-coding upstream 605494 8317718 ~ 8325015 (-)
XLOC_030826 NA non-coding upstream 697237 8409461 ~ 8416833 (-)
XLOC_030830 BX897662.1 non-coding upstream 923044 8635268 ~ 8635392 (-)

Expression


Co-expression Network