Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00059952 |
| length | 1900 |
| RNA type | mRNA |
| GC content | 0.50 |
| exon number | 10 |
| gene id | XLOC_030815 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007116.7 |
| NCBI id | CM002889.2 |
| chromosome length | 72500376 |
| location | 7488064 ~ 7712224 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0007178 | transmembrane receptor protein serine/threonine kinase signaling pathway | biological_process |
| GO:0071363 | cellular response to growth factor stimulus | biological_process |
| GO:0048263 | determination of dorsal identity | biological_process |
| GO:0030509 | BMP signaling pathway | biological_process |
| GO:0006468 | protein phosphorylation | biological_process |
| GO:0009953 | dorsal/ventral pattern formation | biological_process |
| GO:0016310 | phosphorylation | biological_process |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0043235 | receptor complex | cellular_component |
| GO:0016740 | transferase activity | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0046332 | SMAD binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| GO:0004672 | protein kinase activity | molecular_function |
| GO:0004674 | protein serine/threonine kinase activity | molecular_function |
| GO:0004675 | transmembrane receptor protein serine/threonine kinase activity | molecular_function |
| GO:0016301 | kinase activity | molecular_function |
| GO:0005025 | transforming growth factor beta receptor activity, type I | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-991208-8 | Predicted to enable SMAD binding activity and transforming growth factor beta receptor activity, type I. Acts upstream of or within BMP signaling pathway and determination of dorsal identity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be active in plasma membrane. Is expressed in several structures, including anterior neural rod; margin; nervous system; optic primordium; and ovarian follicle. Human ortholog(s) of this gene implicated in brachydactyly type A1D; brachydactyly type A2; and osteochondrodysplasia. Orthologous to human BMPR1B (bone morphogenetic protein receptor type 1B). |
| ensembl_id | ENSDART00000158913 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00061511 | lncRNA | downstream | 110659 | 7376982 ~ 7377405 (-) | True | XLOC_030813 |
| TCONS_00059947 | lncRNA | downstream | 742576 | 6736276 ~ 6745488 (-) | True | XLOC_030809 |
| TCONS_00061934 | lncRNA | downstream | 976225 | 6511314 ~ 6511839 (-) | True | XLOC_030806 |
| TCONS_00061509 | lncRNA | downstream | 1015310 | 6471025 ~ 6472754 (-) | False | XLOC_030804 |
| TCONS_00061512 | lncRNA | upstream | 178793 | 7691875 ~ 7712224 (-) | True | XLOC_030815 |
| TCONS_00061513 | lncRNA | upstream | 211982 | 7725064 ~ 7725275 (-) | True | XLOC_030818 |
| TCONS_00061514 | lncRNA | upstream | 580203 | 8093285 ~ 8096026 (-) | True | XLOC_030822 |
| TCONS_00061935 | lncRNA | upstream | 804636 | 8317718 ~ 8325015 (-) | True | XLOC_030824 |
| TCONS_00061936 | lncRNA | upstream | 896379 | 8409461 ~ 8416833 (-) | True | XLOC_030826 |
| TCONS_00059950 | mRNA | downstream | 288066 | 7198757 ~ 7199998 (-) | True | XLOC_030812 |
| TCONS_00059944 | mRNA | downstream | 742553 | 6726155 ~ 6745511 (-) | False | XLOC_030809 |
| TCONS_00059945 | mRNA | downstream | 742610 | 6726541 ~ 6745454 (-) | False | XLOC_030809 |
| TCONS_00059946 | mRNA | downstream | 742622 | 6726791 ~ 6745442 (-) | False | XLOC_030809 |
| TCONS_00059942 | mRNA | downstream | 920600 | 6516210 ~ 6567464 (-) | True | XLOC_030807 |
| TCONS_00059955 | mRNA | upstream | 208935 | 7722017 ~ 7834582 (-) | False | XLOC_030817 |
| TCONS_00059956 | mRNA | upstream | 210129 | 7723211 ~ 7829657 (-) | False | XLOC_030817 |
| TCONS_00059957 | mRNA | upstream | 230755 | 7743837 ~ 7844258 (-) | False | XLOC_030817 |
| TCONS_00059958 | mRNA | upstream | 231180 | 7744262 ~ 7834582 (-) | False | XLOC_030817 |
| TCONS_00059959 | mRNA | upstream | 258066 | 7771148 ~ 7844265 (-) | True | XLOC_030817 |
| TCONS_00059951 | other | downstream | 56541 | 7431425 ~ 7431523 (-) | True | XLOC_030814 |
| TCONS_00059949 | other | downstream | 339657 | 7148291 ~ 7148407 (-) | True | XLOC_030811 |
| TCONS_00059948 | other | downstream | 558916 | 6929034 ~ 6929148 (-) | True | XLOC_030810 |
| TCONS_00059943 | other | downstream | 956882 | 6531067 ~ 6531182 (-) | True | XLOC_030808 |
| TCONS_00059924 | other | downstream | 2545352 | 4942598 ~ 4942712 (-) | True | XLOC_030789 |
| TCONS_00059954 | other | upstream | 119613 | 7632695 ~ 7632819 (-) | True | XLOC_030816 |
| TCONS_00059964 | other | upstream | 459677 | 7972759 ~ 7972879 (-) | True | XLOC_030821 |
| TCONS_00059969 | other | upstream | 868622 | 8381704 ~ 8388178 (-) | True | XLOC_030825 |
| TCONS_00059976 | other | upstream | 1122186 | 8635268 ~ 8635392 (-) | True | XLOC_030830 |
| TCONS_00059979 | other | upstream | 1165381 | 8678463 ~ 8682371 (-) | True | XLOC_030833 |
