RNA id: TCONS_00061511


Basic Information

Item Value
RNA id TCONS_00061511
length 424
lncRNA type intronic
GC content 0.44
exon number 1
gene id XLOC_030813
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 7376982 ~ 7377405 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cgatggagggaatttggccagtaCACCAGCGTTacttacacccctactctttacgagaagtgccatgggatttttaatgaccacagagagtcaggacctcggtttaacgacTCATTCGAAAGACGTCGcacactgacagtatagtgtcctctttattatattggggcattaggactcaaatagactgcaggttgagcaccccctgctggcctcactaccaccacttccaacagcaatccatgtggtctcccatccaggtactaaccaggcttcagtgagtaactgctcttgggctgcagggtgatatggccaATGTGAAGGGtaatatgaaggaattaagttattattggttttaatcgttttaagtgtattggacataaaacaattaagatgttgcaaaaaaactcaagaatctcaagaattg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00059947 lncRNA downstream 631494 6736276 ~ 6745488 (-) True XLOC_030809
TCONS_00061934 lncRNA downstream 865143 6511314 ~ 6511839 (-) True XLOC_030806
TCONS_00061510 lncRNA downstream 904228 6471025 ~ 6472754 (-) False XLOC_030804
TCONS_00061512 lncRNA upstream 314470 7691875 ~ 7712224 (-) True XLOC_030815
TCONS_00061513 lncRNA upstream 347659 7725064 ~ 7725275 (-) True XLOC_030818
TCONS_00061514 lncRNA upstream 715880 8093285 ~ 8096026 (-) True XLOC_030822
TCONS_00061935 lncRNA upstream 940313 8317718 ~ 8325015 (-) True XLOC_030824
TCONS_00061936 lncRNA upstream 1032056 8409461 ~ 8416833 (-) True XLOC_030826
TCONS_00059950 mRNA downstream 176984 7198757 ~ 7199998 (-) True XLOC_030812
TCONS_00059944 mRNA downstream 631471 6726155 ~ 6745511 (-) False XLOC_030809
TCONS_00059945 mRNA downstream 631528 6726541 ~ 6745454 (-) False XLOC_030809
TCONS_00059946 mRNA downstream 631540 6726791 ~ 6745442 (-) False XLOC_030809
TCONS_00059942 mRNA downstream 809518 6516210 ~ 6567464 (-) True XLOC_030807
TCONS_00059952 mRNA upstream 110659 7488064 ~ 7513082 (-) False XLOC_030815
TCONS_00059953 mRNA upstream 110671 7488076 ~ 7712160 (-) False XLOC_030815
TCONS_00059955 mRNA upstream 344612 7722017 ~ 7834582 (-) False XLOC_030817
TCONS_00059956 mRNA upstream 345806 7723211 ~ 7829657 (-) False XLOC_030817
TCONS_00059957 mRNA upstream 366432 7743837 ~ 7844258 (-) False XLOC_030817
TCONS_00059949 other downstream 228575 7148291 ~ 7148407 (-) True XLOC_030811
TCONS_00059948 other downstream 447834 6929034 ~ 6929148 (-) True XLOC_030810
TCONS_00059943 other downstream 845800 6531067 ~ 6531182 (-) True XLOC_030808
TCONS_00059924 other downstream 2434270 4942598 ~ 4942712 (-) True XLOC_030789
TCONS_00059909 other downstream 3150362 4223515 ~ 4226620 (-) False XLOC_030776
TCONS_00059951 other upstream 54020 7431425 ~ 7431523 (-) True XLOC_030814
TCONS_00059954 other upstream 255290 7632695 ~ 7632819 (-) True XLOC_030816
TCONS_00059964 other upstream 595354 7972759 ~ 7972879 (-) True XLOC_030821
TCONS_00059969 other upstream 1004299 8381704 ~ 8388178 (-) True XLOC_030825
TCONS_00059976 other upstream 1257863 8635268 ~ 8635392 (-) True XLOC_030830

Expression Profile

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