RNA id: TCONS_00059942


Basic Information

Item Value
RNA id TCONS_00059942
length 4345
RNA type mRNA
GC content 0.43
exon number 8
gene id XLOC_030807
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 6515741 ~ 6567464 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGTAGGATTCGTGGCTCCGCCTTCTTTCTCTAAAGTTTGAACTCATCTACAACCCGACAGGACACAAACAGACGTGTATTTGACTTTTGGATCTGCATTTACAAACATATGGAGTAATTTTACCTCTGTACAGGTGCAGTGTGTTGCTATGGCTGCGGTGGTGAAGGCGACCACCAGGGAAATGGCGCTCATTAACCCAGATGATGATTCATCTCCATCCTCTGCGCTCCCAGAAGACTCCCCGAAGCCATCGCTGGGCCCAAAACCACACCTCATGCCAAAACCATTCACCCTGCAAAGAAACCCTACCGTCCGCTCAATCCGAGCCCCAAAAACCAATTTCACAAAACACCTCCAGCGAGCCTCGTCTTCGGAAACACTTCTGGATTACACCAAGCCTAAAGAAATCACACCAAACGCAAACGGCACAGTAAACGGGTCCGCTTCTACACCCCAAAAAACAGACTTGATAGATAAACCAAAAAGCTCTGAGAGCAAAAATGCAGACGAAGATGTGCAAAAAGTTCAATTCAGAAGCAGAGCAAAATCATTGAGCTCTCAAAATGAgactttaaacaaacagaaaGCGCATGATGGCGAGTCTGAAACGGATGGCAAAGTGTCTCCACGATGCTGGCCGGCCCGAAATCGTCTCTCTGTCCATCTGACGTCCAAATTCGAGTCACCTGAGACTGCTATTAGAAATGATGCTCAAATCCACAAGGCGCCACTTTCTCCACCTGCAGTGTCAGAGTCCAAACCTGCGGTGGATAAAAAGGAAATGTTAGACGAAGAGATGAGCGGAGGCAGCATTAAACGAAGGATCAGCCTCCTGTTTGACCGATCTGCAGCGTCTCAGCGCCGGGACGCTGTCAACAGAAGAGACGTCACTCCTGCTGAAATAACTGTTGACATTAAACAGAGAATCCAGAATCTGAGCTTGGACTCGCCGAGGACGCGCTCGCCATCCACTGGAGCTCCTAAAAGTCCAACATCTGAGAAGAACCAGAGCTCCTCAGATGAGCTGCTGAATGAGAGATCATCAGAAAAAGTGGAAACAGAGACAAGTATAAAACCATCAAGAACAACAGAAAATAACACTGCTACATTTGTGGAAAATAGAGAAGAAAATGATGAtgattgtgatgatgatgatgatgatggagaagAAGATATGGAGAACTCTGTCATTATGCCTGTTTACAGACGAGTTGGATTAAGCTTCGATGCAGAGAAGAAACgaaaggaagaagaagaagaaaaacaaaaaaaggatgAGCAGTTAGAGAAGGAAAGAAAGCAACGAAAAGGAGAGGAAGAGAAAAAGCAAGAAGTGGAAAGACAAAGGCAGATAGAAGAAACAAGAAAGCAAGAGGAAGAACTAAAGAGAAAAATGGAAGAAGAAAGAAGACAGGCTGAAAAAGAAatagagagacagaaagaggagGAAAGAGCGAGAATGGAGAAACAACAGAAGGAAAGAGAACTGGAAGAAAAGAGACGAAAAATTCAGGAGATGGAAAGACAGAGAAAAGAAGAAAGACAGAGACAGGAACGAGAAAAAGAAGAGAGGttgaagaaagagagagaaattgaGGAGAGGAAACGAATTGAGGAGGAAAGACTGCGACAAGAGGAGCGATTGAGACAGGAACGAGAAAAAGAGAGGGTAAAGAAAGAAAAGGAGATGGAAGAAGAGAGACAACGGGTCCAAGAGCTGGAGAGACAGAAAGAGGAGGAAAGACGgaggaaagaagaagaagaaatggaGAGAATtaggaaagaaaaagaaattgaagAAGAAAGACGAAGAATTCAAGAGTTGGAGAGACAAATGGAAGAGGAAAGATTGAGAAAAGAACAAGAAATGGAGAGAAtaaggaaagaaaaagaaatggaaGAAGAAAGACGAAGAATTCAAGAGTTGGAGAGACACATGGAAGAGGAAAGATTGAGGAAAGAACAAGAAATGGAGAGAATAAGGAAAGAAAaggaaatggaggaagaaagaagaagaattcAAGAGTTAGAGAGACAGAAAGAAGAAGACAGATTGAGAAAAGAGAGGGAAATTGcgagattaaaaaaagaaaaagaaatggaaGAAGAAAGACGAAGGATTCAAGAACTGGAGAGACAGAAAGAGGAAGAAAGACTGAGAAAGGAGCAAGAAATAGagagaataaagaaagaaaaagaaattgaagaaaaaagaCAAAGAATTCAGGAATTAGAAAGACAGAAAGAGGAAGAAAGACtgagaaaagaaagagaaatggaGAGAAtaaggaaagaaaaagaaattgaggAAGAAAGACTGAGAATTCAAGAGTTGGAGAGACAGAAAGAGGAAGAAAGACTGAGAAAGGAGCAAGAAATGGagagaataaagaaagaaaaagaaatggaaGAAGAAAGACGAAGGATTCAGAAAttagaaagacagaaagaagagGAAAGATTaaggaaagaaagagaaatgGAAGAAGAAAGACAAAGAATTCAGCAGTTGGAGAGACAGAAAGAGGAGGAGAGAATAAGAAAGGAAAAAGAATTGGAAGAAGAGAGGAGGCGAATTCAAGAGTTTGAGAGACAAAGGGAAGAGGAAAgactaaaaaaagaaagagaaatggaGAGAATGAGGAAAGAAAAGGAAGAAGAAATGGAGAGATTGAAGAAAGAAAGAGATTTGGAAGAAGAGAGGAGAAAAATTCAAGAGTTGGAAAGACAGAAAGAGGAAGAAAGGCtgagaaaagaaagagaaattgAAAGAAtaaggaaagaaaaagaaatggaaGAAGAAAGGAGGAGGATTCAAGATttagaaagacagaaagaagaagaaagattaagaaaagagagagaaatgaaaGAAGAAAGACAGAGGAAAGAAAGAGAAATGGAAGAAGAAAGACGAAGGATTCAGGAATTAGAAAGACAGAAGGAAGAAGAACGACTGAGGAAAGAAAGAGAAATAGAAAGAGTaaggaaagagaaagaaatgGAAGAAGAAAGGAGGAGGATTCAGGAAAAAGAAAGACtaagaaaagaaagagaaatggaAGAAGAAAGACGAAGGAATCAGGAATTAGAAAGACAGAAGGAAGAGGAAAAATTGAGAAAAGAAAGAGAACTGGAGAGATTAAGgaaagaaatggaggaagaaagacgAAGAATCGAGGAGATTGAAAGACAAAAAGAAAGACTGAGACATGAAGGAGAAAAAATGATGGCGATGGAAATGTGTAAATCAGCAGAGCGGCCGCAAGAAGTTCCTACGAGTTTTGATTTAATATCGTTTGACGTTGAAGAACCGTCGCCGCCTGTCTCCTCCGATTCCATGGATGTCGAAGTAATTTACGATGATTTTTCGGTAAAACCACAAAGATGGGGAACCAGAGTGAGAGATTCTCCAACAACATCTCCAACCAGAGAAACCGCTGACCTCAGTCTACAGCCACAATTAAAATACAGTACACCGGGACTCCAAGAACCAGCCGGAGATCGGGTACATGTAGAAAACCTAATCGGATTTGAGCCTGAAGCATCCAGTCCACAGAACACGTCCTATATACATACAGAAAACAGACATCCGTCTTCATCTGAGGAGGAAACTGAGTGTACGCCAGAAGATCTGCTGGAGCCAGAAACTGAATTAAATGAGGATCAGTTGAAGGACTGTGAACCAGAAGAAGATCAGGACACAGAGAATCTAATCGAGGAAACAGAGGAACAAAGTGAAAACAGTGACACTGTTGACAGTCAGGGCACAGCGAGACTCAATCAAGCCCTTCAGAGACTGAATCAAGCCAGACGGCGAAAAACATCCAGTGATTCAGAAAACACAAATACCCCAATTCAGGAGGAGCCCGAACCACTGCCTCTTCTTGAGTCCTCAGCTCCTCCATTGGACTCCAGCGTTTTACGTTCCAAGGTCGATCTGGGAAAGAAGCGAAGTATAAAGCGCTCCAGACCGTCCCGTGCCGTCCGACAGAGAGCCGCTCTGCCTGCTCTGACTGAGGGAACAAACCCCGACTGGAGGTTCTGCGACTCCACAGATGCGAAAGTTCAGATTTCTAATGGAGGGGACTCAGAATCGGAAGAGGAACCATCCCAGGACGTCACGTCTTCTCCGGCCCCCAGTCAGCCCAAAAGAGTGTCTGTGTTTCCCGGGATGAACCCTTCAGCCTTGATGGCTCAGTTGAAGCGCAGGAGTGCCGCTCTAGATTCAGATGCTCAAGCAGAAGCTGCTACCCCTCCGTCTGTTCCCTCTCGCTCTCCCCGAACACCCAGCAAGACCCTCGGCCCCCGAGTGCTGCCCCCTGCTGACGCAAAGGATGCTAGG

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-317 Is expressed in neuromast mantle cell; neuromast support cell; and olfactory epithelium.

Ensembl:

ensembl_id ENSDART00000184985

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061934 lncRNA downstream 4371 6511314 ~ 6511839 (-) True XLOC_030806
TCONS_00061510 lncRNA downstream 43456 6471025 ~ 6472754 (-) False XLOC_030804
TCONS_00059947 lncRNA upstream 168812 6736276 ~ 6745488 (-) True XLOC_030809
TCONS_00061511 lncRNA upstream 809518 7376982 ~ 7377405 (-) True XLOC_030813
TCONS_00061512 lncRNA upstream 1124411 7691875 ~ 7712224 (-) True XLOC_030815
TCONS_00061513 lncRNA upstream 1157600 7725064 ~ 7725275 (-) True XLOC_030818
TCONS_00061514 lncRNA upstream 1525821 8093285 ~ 8096026 (-) True XLOC_030822
TCONS_00059940 mRNA downstream 7960 6489260 ~ 6508250 (-) True XLOC_030805
TCONS_00059939 mRNA downstream 82633 6401427 ~ 6433577 (-) True XLOC_030803
TCONS_00059938 mRNA downstream 138345 6350328 ~ 6377865 (-) True XLOC_030802
TCONS_00059937 mRNA downstream 685173 5708576 ~ 5831037 (-) True XLOC_030798
TCONS_00059936 mRNA downstream 846331 5666864 ~ 5669879 (-) True XLOC_030797
TCONS_00059944 mRNA upstream 158691 6726155 ~ 6745511 (-) False XLOC_030809
TCONS_00059945 mRNA upstream 159077 6726541 ~ 6745454 (-) False XLOC_030809
TCONS_00059946 mRNA upstream 159327 6726791 ~ 6745442 (-) False XLOC_030809
TCONS_00059950 mRNA upstream 631293 7198757 ~ 7199998 (-) True XLOC_030812
TCONS_00059952 mRNA upstream 920600 7488064 ~ 7513082 (-) False XLOC_030815
TCONS_00059924 other downstream 1573498 4942598 ~ 4942712 (-) True XLOC_030789
TCONS_00059909 other downstream 2289590 4223515 ~ 4226620 (-) False XLOC_030776
TCONS_00059873 other downstream 4303422 2212672 ~ 2212788 (-) True XLOC_030748
TCONS_00059869 other downstream 4553801 1962282 ~ 1962409 (-) True XLOC_030744
TCONS_00059868 other downstream 4556010 1960073 ~ 1960200 (-) True XLOC_030743
TCONS_00059948 other upstream 361570 6929034 ~ 6929148 (-) True XLOC_030810
TCONS_00059949 other upstream 580827 7148291 ~ 7148407 (-) True XLOC_030811
TCONS_00059951 other upstream 863961 7431425 ~ 7431523 (-) True XLOC_030814
TCONS_00059954 other upstream 1065231 7632695 ~ 7632819 (-) True XLOC_030816
TCONS_00059964 other upstream 1405295 7972759 ~ 7972879 (-) True XLOC_030821

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000337_01179622_01203684.mRNA True 1931 mRNA 0.49 10 CI01000337 1179622 ~ 1203961 (+)