XLOC_030833 (zgc:153352)


Basic Information

Item Value
gene id XLOC_030833
gene name zgc:153352
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 8661414 ~ 8682590 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00059978
GATCCGATTCTTAAGAACGATGCACTTACGACTCGAACAACGCAAGCGTAAACAATTTGaagtaaagtctagataggatacaacTGTGTATACCAACATCTATAGCATTATTTTTGTGACAGtgtacaacaataaataatatttttacattactgtgaaggttgggtCAGGGGTAGAATTCgcgttaacttccggctgcagctgtatccctcaTTAGCAACAACCACAGTTTGACACGAATGTCGAGATTGTGTTTATTACAACAGTAGAAGTAGCGTGTGATTGAATACAGTCGGGATGTGTTCGGTGAGGTTTATGGtgatgtgtgtggatgagtgtgtggatgtgtatTATACAGACGGGCTCAGATTGCAGCTCTCGCCCTGCGGCTCTGAGTTTCTGATAGAGAAACAGCCGTCAGCCTGCGCGCACCcgctgcaggacacacacacagttaaacagAGGACAAGATTCGCCATCAGCGAGTTTAAGCCATTAGTATTGGATGCTTTGGCATTCAGAAATAAGTATGCAACTCGTCCATATTTGCCCGAAGAGCTCATAACTCACGAATTCAGTTCTACGAACAAGACTTCCTCAAGCAGTGCCATAACAGAGGTGGAGTGGCCTGAATCTGACTCCTGCATCACAGGAGCAAATGGAGAGATCACAGTCTGCTCTGTAGAAGGACACGCCAAACTCATCCTTTCTTCTTCCGGGGAAGAGTTCACGGTGGATTTTATCTGTCACTCCAGCAGAAATAAAGTCGAATCACAGGATCCAAAGCTTCAAGAACATCAACACAGAAGCACATGTTTGTTTAGTTCTTTAACATCCAAATCTGTGGGTGCTCAGATGGACCGTCCTGGATTGAATCTAAAATCCCCCAATACAGAAATACTGGAGTCAACAAGCGTGAAGTCTGGAAAAGTGCATGTGTACACCAGAGTGATCCAGCAGTTTTCCAGAGCACTTTACCCAGAGATATGGCACTATCCTCTACAATATTTCCAAACAGGCCGGAAGACTCTACTTCCAAAACCTTTGCCTTTAAAATGCCCTTCTCCTCATCAACACAAGTGGAGATATGACGCTGTCAATCCTGATTTGCTGGAAAAGGAAGAGGAAGTCACAGCCGAGCTGGTTAAAGTGGTCTGGTGCAAAGGCGTCACATACCGTATAGTAGATGGAGTGATACCGATGGTGGAGATCTCACCCGGCGATGGTTCACTCATCAGATCTAATGGAGTTCTAGCAAACTACTTCACACATTACAAAGCTGGAGCTGTTCAAGCAGACGGAAGGGAGTGTGTGTATTACCTGTGTGGTCTTCCGCCGGATGTACCAGGTCAGCTGTATTCTGTCCAGTCTGTTGTTACACGAGCGAGCAGGATTCTGAAATGCTTCATTCAGGCCAGAAGCTCGGTCAGGACCCCGCTCTCTCTTTACTGCTGGACTgagCAGGCTGCGGTGTGTGATTGTGCACGTGTGGTTCAGGAGGTGACCGTGGCAGGTTCTGGATCTTTTAAAGCTCTGTCAGACGGGACTGTTGAGGTTTTGTTTTTCGATGGAGTTAAAGCACAGATGATGTGGAAGTCTGATGCATATACCGCTGCACAGTGTGGAGAAATGGAGCAAAGACTAAAGACAGAAAGCAGGCCATCTGACAGGTGGTGCCAGCTCAGTTTGCCAGATGGGCATCAGACTCTTGTACATGTGGACACAGACAAAACCTACCAAAGatatGTGTCTGCTGTAGTGCAGTGGTGTGACTGGGTAAATCAGACGGAACAGAGCACGAGTGCTCTCTCAGTCTCCGCCCCTTCTGACACACCTCAGCCAATAACCTGCAGATCTGTGGTTTCAGAGCTGGAAAAAATCAAGAGATTCAActTTTTGTTGGAGAACAGCCCAGTCCTGCGTTTACCAGTGAGATCTTTGAGCTGCGAGCGTTCATCTGACCTCTCTGAGACTGAACTCACTGAGACCTGCATCTCTGAGGCTCTGCAGAAAACCGCTAAAGCCATTCAGGACATTGATGCTCTGTTGTCAAACAGATCGTAGGCCTGTGTGTACATGTGGCTTTTCAAACGCATCTCACAACTCATCTGCTTTTATGGATCTTACTCAGTGAATGGACTATTTTGCAGTTTACCTGTCAAGAACATATTTCAAATCCTAAAACATCCAAAGaagtattttattgtaaattaaataaaaatgaaggctatttttta
>TCONS_00059979
ACAACCACAGTTTGACACGAATGTCGAGATTGTGTTTATTACAACAGTAGAAGTAGCGTGTGATTGAATACAGTCGGGATGTGTTCGGTGAGGTTTATGGtgatgtgtgtggatgagtgtgtggatgtgtatTATACAGACGGGCTCAGATTGCAGCTCTCGCCCTGCGGCTCTGAGTTTCTGATAGAGAAACAGCCGTCAGCCTGCGCGCACCcgctgcaggacacacacacagttaaacagAGGACAAGATTCGCCATCAGCGAGTTTAAGCCATTAGTATTGGATGCTTTGGCATTCAGAAATAAGTATGCAACTCGTCCATATTTGCCCGAAGAGCTCATAACTCACGAATTCAGTTCTACGAACAAGACTTCCTCAAGCAGTGCCATAACAGAGGTGGAGTGGCCTGAATCTGACTCCTGCATCACAGGAGCAAATGGAGAGATCACAGTCTGCTCTGTAGAAGGACACGCCAAACTCATCCTTTCTTCTTCCGGGGAAGAGTTCACGGTGGATTTTATCTGTCACTCCAGCAGAAATAAAGTCGAATCACAGGATCCAAAGCTTCAAGAACATCAACACAGAAGCACATGTTTGTTTAGTTCTTTAACATCCAAATCTGTGGGTGCTCAGATGGACCGTCCTGGATTGAATCTAAAATCCCCCAATACAGAAATACTGGAGTCAACAAGCGTGAAGTCTGGAAAAGTGCATGTGTACACCAGAGTGATCCAGCAGTTTTCCAGAGCACTTTACCCAGAGATATGGCACTATCCTCTGTCATTAGCTCTTGAACACTAGGAATCACTAAAGACTAAAAGAAATACTGATAATGGGGAAGATG

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060929-1142 No description available

Ensembl:

ensembl_id ENSDARG00000092445

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00059978 False 2237 mRNA 0.45 13 8661414 8682590
TCONS_00059979 True 847 processed_transcript 0.45 3 8678463 8682371

Neighbor

gene id symbol gene type direction distance location
XLOC_030832 NA coding downstream 17231 8640678 ~ 8644183 (-)
XLOC_030831 BX897662.3 coding downstream 21414 8637804 ~ 8640000 (-)
XLOC_030829 fyba coding downstream 25246 8616667 ~ 8636168 (-)
XLOC_030830 BX897662.1 coding downstream 26022 8635268 ~ 8635392 (-)
XLOC_030828 rictora coding downstream 47197 8533929 ~ 8614217 (-)
XLOC_030834 paip1 coding upstream 2062 8684652 ~ 8711157 (-)
XLOC_030835 mybbp1a coding upstream 30208 8712798 ~ 8765428 (-)
XLOC_030836 BX897662.2 coding upstream 40338 8722928 ~ 8723043 (-)
XLOC_030837 fgf10b coding upstream 86479 8769069 ~ 8817841 (-)
XLOC_030838 adamts12 coding upstream 149709 8832299 ~ 8910703 (-)
XLOC_030826 NA non-coding downstream 244581 8409461 ~ 8416833 (-)
XLOC_030824 NA non-coding downstream 336399 8317718 ~ 8325015 (-)
XLOC_030839 AL928901.1 non-coding upstream 277138 8959728 ~ 8963775 (-)
XLOC_030840 NA non-coding upstream 347650 9030240 ~ 9031751 (-)
XLOC_030843 NA non-coding upstream 424495 9107085 ~ 9127559 (-)
XLOC_030844 NA non-coding upstream 461777 9144367 ~ 9146777 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000338_00111541_00118550 NA coding CI01000338 null 111360 ~ 118977 (-)