XLOC_030835 (mybbp1a)


Basic Information

Item Value
gene id XLOC_030835
gene name mybbp1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 8712798 ~ 8765428 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00059981
AAAAAGACGTCTCCGCGACCTCCCCACGTGTGCTCCTCTCGCATGCTTCATCTCTGATGGTTGCAGTAATGCAGACAGACATGGGAGAGACCGAAAACTCCGCTGTCCGACCCAAAGTCACCGATGCCAAAGGCATCCTGAAGCAAAACAGACAGTTCCTGGATTACTTCTGGGACATCGCGAAACCCGAGAGACAAATCCGACTCAAAGCCATAGAAGACCTGATTAATTACCTCAAGAACAGCGAGCAGGCAGATGAGCTGAAGTACACACTGAAGAGACTAGTGGATGGTCTTTCTCACACAAGAGAAGACGCTCGATCAGGATACAGTGTTGCTCTCGCTCAGcTGCTGAGTGTATTTGAGGAGATCTCACTGAAATCCACACTGAACAGtgtaaaagaaaaacacaacCTTCTGACCGCATCAAAGAAACTGATCAGAAATGCAGTGTTTGGGAACTTCTTCGGGGTTCTTGCCCTCTCTCAGTCCACTCGTCTGCATAAGGAGCCGCAGGTTATGCTGGAGTGTGTCCAGCTCCTGCAGAGTCTGTCCGAGTACAGAGAGCACCTCAGAGACCTGCCCAGAAAAACCATGGTGGATATTCTGTCAGAGACGTCGCAAGATGTGTTCGAAGAGGTACTGTTCAGTGCTCTTCAGTCTGACCTGACGTCGGCCCTCAAGAGCCCTGAGCAGCTGGAGCTCCTCCTGGTGGCCCTGCAGAAGTTCCCCTCCGTCCTCAaacccaaaaaactcaagaagcTTCTGGGAACCACAGCAGTCATTACCAAACAGAATATGCCCAGACTGGTGGAGGTTTTAAAGACTGCTGCCCGGTCTGTGAAGAAGGAGAACATTCTGCCTGCGGTGGCGCTGGATTTACTGCAGGTTTCTCTGCGAGAGGACAACTTTGAGATGTTCTGGACTGATGCCATCATTACGGGCATGATGTCGGAGATGCCTGGACCCACACATTATCTGAGTTTCCGTCTGCTGGGAGCGTCTCTGCCGCTGCTGTCCATTCCTCAGCTTCAGTTTGTGCTGTCCGGTGATGTGATGAGACAATACGGTGAACACACGATGTCTGCTCAGATGCCAGACAGATTTAAGTTTGCTCCAGAAATGGCGGGGTATGTCGGGGAGTTCATGCAGAGCTGCACAGACCCTGATAAACAGCTGGTCGTGGTGCTCGGCTTCACACAGCTCACTAACCAGGGTAATCCTGTGGTCCCGTCCTACTGGAAGGCCCTGGAGAACATGCATCCGTCTGCGGTGCAGCGGTACGTGGACTGGCTGATTGAGGCCTTCTGCAAACCCCAGCTGGAGAACTGCCTGGACTTCAGCACACGCAGACAGAAAGGAAACCAGGAGGCAGCAGTAGAGAGTGAGAGCTGTGTGTCCAGATTTCGTAAATGGATCATTCCTCGTCTCACTTTCATTGTGGAAAACCAACAGACTAAAAAACAGGAGGCTCTTGTCATGAAGGTGGTCAGGTTTATTTTCTTCCACGCCTTCTTTGAGGTGAAAAAACCCACCTCAGAAATCCCAGAAACCACACAGGCTCTATCAGTACCCATCAATCAGCAAACACGTACCGCCGTCGTTTCAGGCTTCTACAGTCTCCTACAGGTCCTAAACTCAATGATGGTGTTGGGAGAATCAGTGGAGGTGCAGGGGTTGAACTTCAGGAGGATTGTGGGAGTTCAAGCAGACGGAAGCATGTGGATCTACAGTGTGTTTCAGTTCGCCTCCATGCTGCTCAACCAGAACAAATATGTCAAGAGTCTTCAGAGCTTCAGTCCAGAGCAGAGACAGGGCTGGGACAGtgTGCTGGAGTCAGTGGAGGCTTTGAGAAAAAAGGCAAAGACAGCATCCTCACCCGAACACACGGCCTTCCAGCAGCTGTTCCTGCTCATTGGGATCCAGATGTTCACGTCTCCAGAAGAAAGTTTGGACCTGTTGAAGGATTTGCAGACCTGCATGGAGAAAGCTCAGGCTAAGAAATCCAAAAAGAAGAAAGCAActgatGAGCCGCACTGGGTGGAGGTGATTGTTGAGATCCTGTTGTCTCTTGTGTCTCAGCCTAGTCGGCTGGTTCGCAGTGTGTGTAAAACTGTGTTTGGCCGCATCTGTCCTCACCTCACACAAGCAGCCCTGAGCTCCATCCTGAATGTTTTGGACCCGAACAAGGATGAGGATGAAAGTGGTGTTGTGGTGACAGATGACAAAAAGAGAAAGCTAAaagaggaggatgatgatgatgaagaagaagatgatgataatgatgagggtgatgatgatgatgatgatgatgatgaagaggggGGCGAGGAGGGTGAAGAAAGCTCTGATTCTTCAGATGATGAAGAGGAAGATGAAGCCATGGAGGAAGGACAAGAAGTGGATCAGAACTTCCGGTTGGAGTTGATGAAGGTTCTGCAGGGCCAGAATGCTTTGgccaCTGAAGAGGACGGCAGCGATGACGAGGAGCTGGATGATGCAGCCATGATGAAGCTGGACGGGAGCTTGGCTTCTCTCTTCCTGGAGCAGAGGAAAAAGATCCAGGCCAAAAAAGATGAGAAGGACAGACTGAACAAGGAAAAGGGTCTCGTCCGGGACTTCAAGATTAAAGTTCTGGATATGGTGGAGGTGTTCCTGAGCAAACAGGGCTTCAGCCCTCTGGTTCTCGGGATGGTGGAGCCGCTGCTGAGCGTGATTGAGAACGGGATGAGCTCTGAAAGCAGTCAGCCGGAGCAAGACTACCTGCGCAGGGTAGCAGACATCTTCAGGAATCGGCTCTGTCGTGGGAAGTTTTACTGCAAGGAAATTGACGGCCGAGAGGCGGAACTTCATGAAATGCTGGAGCGTCTGATTGGCCGAGCCCAGAAACTGACAGACTCATCTGTGGCTTTGTACTACTTTAGTGCTGCTCTCTATGTGCTGAAGGTGTTAAGAGGGTCTGTGGTCGATCAGGAGTTAAGTACTATGGGTAAAGTGGAGGTTGAGAGAGCGACGACATGCTTAAAGAATGCTTTGACGTCTTTTATGACAAAGAGAAAAAGTCCTCTGACCGGAGCCATGTTCATTGACCTCTTCAACAGGTTCCCCGTGTTGTGTGTGAATCTGATGGACACGGCGTTGGAGAACATTACAGCTGGACTGAGGGACCATCAGCAGGGTCAGGCATGTTTCATTATGCTCAAAGCTTTGCAATGTAAACATGTGAAGAACCTGATGACTGGTGAACAGACCACTGAGCTTTATAAGAAGGTTGTGGATCAGCTCACTAAGAGTTTGGAGAATGTGCAGTGTAAGAACAAAACAGCTCATGATAAAGTGGTCAAGGCGCTGGAGCTCTGTCTGCACGTCGTCAAAATTGTTCTTAATCAGAAGATGCGAGTTAACCTGGAGCCCCTGCAGGATGTTCTCGCATCCATGAACGCAGAAGGATGCCTGGAAAAAACAGGAAAGCTGGAGGACACGTACTGGAGTGTCATGAGATTGTTTGGCGTTATAAAACCAAAGATGGAAAAGGTGAAGATGGTCCCAGAGGCAGAGCAAACCGAAGAGACTACGAAAAAGAAAAAGGGTTTCCTTCCTGAGACCAAGAAACGCAAGAACCGCAAGAAGCCCACCATACTGGAGGGCAAAGAGACGGAAACACCTGTGGAAAAAACACCTGAAGGAGCATCAGGAGagggaaagaagaagaagaacaagaagaaaaacaagaaaagaaaacagcAAGCAGGAGAAGAAACACAAGATCAGCCCACACCTAAGAAAGCCAAAATGCAGCAGCagcaaaaacaaaagaagaaaaagaagaagaaaggaGCTGATGGGGAATAATTGGACAATATTAAATGATAACTGTATGTTCAGCGCAAGACTG

Function

symbol description
mybbp1a Predicted to enable sequence-specific DNA binding activity and transcription corepressor activity. Predicted to act upstream of or within regulation of transcription, DNA-templated and rhythmic process. Predicted to be located in nucleus. Predicted to be active in nucleolus. Is expressed in several structures, including digestive system; immature eye; mesoderm; musculature system; and nervous system. Orthologous to human MYBBP1A (MYB binding protein 1a).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0048511 rhythmic process biological_process
GO:0005634 nucleus cellular_component
GO:0005730 nucleolus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0008134 transcription factor binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003714 transcription corepressor activity molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-030131-9864 Predicted to enable sequence-specific DNA binding activity and transcription corepressor activity. Predicted to act upstream of or within regulation of transcription, DNA-templated and rhythmic process. Predicted to be located in nucleus. Predicted to be active in nucleolus. Is expressed in several structures, including digestive system; immature eye; mesoderm; musculature system; and nervous system. Orthologous to human MYBBP1A (MYB binding protein 1a).

Ensembl:

ensembl_id ENSDARG00000078214

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00059981 True 3894 mRNA 0.49 27 8712798 8765428

Neighbor

gene id symbol gene type direction distance location
XLOC_030834 paip1 coding downstream 1641 8684652 ~ 8711157 (-)
XLOC_030833 zgc:153352 coding downstream 30208 8661414 ~ 8682590 (-)
XLOC_030832 NA coding downstream 68615 8640678 ~ 8644183 (-)
XLOC_030831 BX897662.3 coding downstream 72798 8637804 ~ 8640000 (-)
XLOC_030829 fyba coding downstream 76630 8616667 ~ 8636168 (-)
XLOC_030837 fgf10b coding upstream 3641 8769069 ~ 8817841 (-)
XLOC_030838 adamts12 coding upstream 66871 8832299 ~ 8910703 (-)
XLOC_030839 AL928901.1 coding upstream 194300 8959728 ~ 8963775 (-)
XLOC_030840 NA coding upstream 264812 9030240 ~ 9031751 (-)
XLOC_030841 atp5meb coding upstream 304954 9070382 ~ 9073433 (-)
XLOC_030830 BX897662.1 non-coding downstream 77406 8635268 ~ 8635392 (-)
XLOC_030826 NA non-coding downstream 295965 8409461 ~ 8416833 (-)
XLOC_030824 NA non-coding downstream 387783 8317718 ~ 8325015 (-)
XLOC_030843 NA non-coding upstream 341657 9107085 ~ 9127559 (-)
XLOC_030844 NA non-coding upstream 378939 9144367 ~ 9146777 (-)
XLOC_030845 AL845369.1 non-coding upstream 400967 9166395 ~ 9170534 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000338_00136613_00155941 MYBBP1A coding CI01000338 null 136366 ~ 155941 (-)