XLOC_030894 (sdf2l1)


Basic Information

Item Value
gene id XLOC_030894
gene name sdf2l1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 13308531 ~ 13315726 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060066
GTCATGCTGCGATTGGCTAGAAAGCGTGTCAGCGTTTGAATGGGACTCTCCGTATCCATTTTTCTGTGATGTACATAGACGCCGGCTGCAATGATGGGGCCGTTAAGAGTCATGTCCGTGTTTTTGgatttaattttagtgtgtttgGTGTTTTCTCCGTGCGGCGCTCGTGATGTGGACTCCAGCTACGTGACGTGCGGATCTCTGGTCAAACTGATGAACACTCGGCACAGCGTCAGACTGCACTCGCATGATGTCAAATACGGCTCAGGAAGCGGGCAGCAGTCAGTAACGGGTGTGGATTCAGCTGATGATGCCAACAGCTACTGGCGTATTCGTGGAAAGCCAGGCAGCATTTGCCAGCGCGGGGCACCCATTCGATGCGGACAGGCCATCCGAATTACACACATGACCACTGGACGCAACCTACATTCCCATCACTTCAGCTCGCCGCTGTCTAACCACCAGGAAGTGAGTGCGTTTGGGGAAAATGGAGAAGGAGACGATTTGGATGTGTGGAACGTCCAGTGCAGTGCAACATACTGGGACCGTGAGGACGCAGTGCGATTTAAACACACCGGCACCGAGGTTTTCCTCAGCGTTACCGGTGAGCAGTACGGTCATCCAATCAGAGGCCAGCGTGAGGTCCATGGAATGCCTTCGCCCAATCAGCATAACTACTGGAAGGTGATGGAGGGGGTTTTTATTCAGCCCAGCAGTGACCCTATTCACCACGATGAGCTCTGATGATGCTGATACATCATTATTATGAGCGACTGAGAACTGCGCAAAACTTCTCTATATACATTTATCGGTCCAATTCTTATAGATGTGTTGCAGATTTATCACATTTGCTTTGAAGACGTCACACGCAATATGTACATCACAGACAAATAGATGAATTGGTTTGTTTTACTGGATTTCTTTTGAATGGAATTTTGTTATTTGTACATAAGGGAGTAAAAGGGCAAGGTTTCGGGCCACAAAATCgacttatttattttagaattaaatATTGAACTGGAACAAATTACATTATTGACTTGCAAAATCATTTGAGCCACTGTGAAATCCTGAAATATTTCTGGATTCACTGTGGGGAAAATGTAAAATGGCTATTTCtgtttttggtaacacttcacaGCAAGGTTCAGTTGGTTAAtgcattaatttaatacatttattacatgatGTACTCATTTTAAACTGATATGAATGATATTGCTAAATCCGATACATTGCATTTATgttcaaaacaaatacattatttGATTGTAATAATAAGTAAACATTAGAATGAACATGCGTTGATGAATGAACGCCTTAGTAGTTTTCATTTCATGTGCTTAACTAATGTCAACAaattaaaccttattgtaaagggtTACAAcgtttttatttcctaatatgaCTGTGTTCTGTAGACTGTAATTTTCAATCCCTTTCATACTGTATGTGACCTGATATGTACATAAATTGATAAAAGCGtgaataaatttttttgaaatattta

Function

symbol description
sdf2l1 Predicted to enable dolichyl-phosphate-mannose-protein mannosyltransferase activity. Predicted to be involved in protein O-linked mannosylation. Predicted to be located in membrane. Predicted to be active in endoplasmic reticulum. Is expressed in hatching gland; nervous system; notochord; otic vesicle; and polster. Orthologous to human SDF2L1 (stromal cell derived factor 2 like 1).

GO:

id name namespace
GO:0035269 protein O-linked mannosylation biological_process
GO:0071712 ER-associated misfolded protein catabolic process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0004169 dolichyl-phosphate-mannose-protein mannosyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040808-46 Predicted to enable dolichyl-phosphate-mannose-protein mannosyltransferase activity. Predicted to be involved in protein O-linked mannosylation. Predicted to be located in membrane. Predicted to be active in endoplasmic reticulum. Is expressed in hatching gland; nervous system; notochord; otic vesicle; and polster. Orthologous to human SDF2L1 (stromal cell derived factor 2 like 1).

Ensembl:

ensembl_id ENSDARG00000035631

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060066 True 1513 mRNA 0.42 3 13308531 13315726

Neighbor

gene id symbol gene type direction distance location
XLOC_030893 NA coding downstream 1826 13277241 ~ 13306705 (-)
XLOC_030892 top3b coding downstream 56624 13211452 ~ 13251907 (-)
XLOC_030891 ppm1f coding downstream 101653 13181029 ~ 13206878 (-)
XLOC_030890 mapk1 coding downstream 141411 13104851 ~ 13167120 (-)
XLOC_030889 ypel1 coding downstream 221915 13037106 ~ 13086616 (-)
XLOC_030895 ube2l3b coding upstream 21781 13337507 ~ 13353905 (-)
XLOC_030896 AL954191.1 coding upstream 217148 13532874 ~ 13532988 (-)
XLOC_030897 si:ch211-230g14.3 coding upstream 247572 13563298 ~ 13564961 (-)
XLOC_030898 purba coding upstream 327441 13643167 ~ 13646054 (-)
XLOC_030899 zgc:65851 coding upstream 355888 13671614 ~ 13685047 (-)
XLOC_030888 NA non-coding downstream 471924 12835526 ~ 12836607 (-)
XLOC_030881 BX276096.2 non-coding downstream 942206 12366209 ~ 12366325 (-)
XLOC_030880 CR735143.1 non-coding downstream 1115517 12192898 ~ 12193014 (-)
XLOC_030876 castor1 non-coding downstream 1276610 11982364 ~ 12031921 (-)
XLOC_030905 CR388049.1 non-coding upstream 929423 14245149 ~ 14245280 (-)
XLOC_030911 NA non-coding upstream 1465116 14780842 ~ 15176098 (-)
XLOC_030912 NA non-coding upstream 1683896 14999622 ~ 14999996 (-)
XLOC_030913 CR936518.1 non-coding upstream 1871097 15186823 ~ 15215784 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000071_04464134_04466967 SDF2L1 coding CI01000071 null 4464134 ~ 4467233 (+)