XLOC_030899 (zgc:65851)


Basic Information

Item Value
gene id XLOC_030899
gene name zgc:65851
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 13671614 ~ 13685047 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060074
TTTGCAAAATTTGACCTTTATTCATCCTCGCTTCGCTTTTAGCGTCCGCATGATGCCAATCTCGCTCGCATGAAAAGCCGTTGAGTGGCCACAAAAGGCCTGGCGGTGAATGAGCGATCTCTCTCCCGGGACTCTGTGTTTTTGCTCAGGGTTGCAGGTTTCCCCCTCCACCAGCACCACCGCCCTGCGTCAGATGATGCGTTGCCTATAAAACCCGCCGGTGTGCCATCCCGACTGgcactctcacacactctctctttctgtctctgtcTTCCACGTCCACACACACTTCACTCACTCGCTCTGTGATCTCGAGCCTCCAGCATGAGTTACTCCGGCGACATCTACACGAGCAGCTCCTACAGGAAGATCTTCGGGGATGCGCCTCGCCGTGTGCCCGTGGGCAGCAGCCCATCCCGGGTGACGGTGAGTTACCGCTCCGCaccccagcagcagcagcaccgcACCTACGGCTCTCCGTCCCCCATGATCACATCCTCCAGCTACCGGAGCAAACTCGCCTCCGGCCGCGGAGCTTTCCAACCGGACAACGTGGACCTGACGCAGACCACCGCCATCACCAACGAGCTGAAGATCATCCGCACCAACGAGAAGGAGCAGTTGCAGGGCCTGAACGACCGTTTCGTGACGTTCATCGAGAAGGTGCACAACCTCGAGCAGCACAACAAAGTTTTGGAGGCGGAGGTGGCTCTGCTGCGCCAGCGCCACAACGAGCCGTCGCGCCTGCACGACCTGTACGAGCAGGAGATCCGCGAGCTGCGCGCGCGCGTCGAGGAACTCGCGCACGAGAAGAGCCAGATGCACCTGGACTGCGTGCAGATGAACGATGCGCTGGAGCGCGTCAAAGACAAGCTGGACGAAGAGGCACGGGCTCGGGAGGAGGCTGAGAACAGCTTGAAGGGATACCGCAAGGATGTGGACGACGCCACCCTGTCCCGCCTGGAGCTGGAGAAGAAAGTGGAGTCGCTGCTGGACGAGATCGCGTTCCTGAGGAGAGTGCACGAGGAGGAGCTGCAGGAGCTGCAGGCATCCCTCCAGGCCACACAGGTTTCAGTGGAGATGGACGTCAGTAAGCCTGACCTTGCTGTGGCCCTGAAGGACATCCGTGTTCAGTACGAGTCTCTGTCATCCCGGAACCAGCAGCAGGCAGAGGAGTGGTATCGCTCTAAGTTCGCCACTGTGACGGAGGCTGCGGCTCGCAATAATGATGCTCTGAAGCAGACCAAGGATGAGCTGTCCGAGTACCGGCGACAGCTGCAGTCCAGAACCCTAGAGATCGAGGCCCTCAAAGCCCACAATGAGGCCCTGGAAAGACAGCTGGCAGAGATGGAGGACCGGCACAGCAACGAGATCGGAGAGCTGCAGGATACCATTCAGCAACTAGAATCTGCTCTGCGGAGCACGAAAGGTGAGATGTCCCGGCACCTGCGCGAATACCAGGACCTGCTGAATGTCAAGATGGCGCTGGACATTGAGATCGCAGCATACAGGAAGCTGCTGGAAGGTGAGGAATGCCGCCTGAGCTCTGTGGGCGGAGCCATTCTGCAGTCTGCCTACTCTTATCCAACCAGTCGCACGTATACCCTAAGCGCCTACAGGAGGGCTGGAGCCAAACCCGAAACAGAGGAAGAGGAAAagcaggaggaggaagaggaggaagaggagcaggaagaggagaaggaggaagaggaagcagaggaggaagaggaggctGGAGAGGAGGCTGAAGAAGGAGAAGAACAGGAAGAAGGAggagatgaagaggaggaggaagaggaagaacaGGAGGAAAAGGAGAAGGAAAAGGAGGATGAGAAGAAGGAAAAGGAAGAAAAGAAGAGCCCCAAGGAACAGAAGGAGAGTGAGAAAGAGAAGGAGAAAGAGAAGGAGAAGAAGAGCGATAGCAAGGCAGATAGCAATAAAGCTGATAGCAAGAGTGAAAAGGCGGACAGTAATAAGGGTGAAAAAGCTGCTGCGGCCAAGAGCAAGTAAAGCTGCGCTCCATCAGCGCTTCCGCCACATTCGTCCGTGTCCTCTTTACCTCTCTGTCCCTctgccacaaacacacacaccaaaacGCCATCTTCACTCTCATTTCACTGGGTAGAGCTGATTTCATCCGCTGATGTGTCAGGACCTCTGCAGGAAAGCATAGAGTCAGTAATGAACGAGGGGTGTTCTGTAAAAGCACTCAAGTGATTAAACAGGATCTATGCAGAACGAATAGGAAGTAGGAAGTAGTTCACccaagaaaaatcacaatttttgtCATCATTTGTGTCCTTCAGATAACCAGAATGTATCCAAAccctaaaagaaaagaaaaagtagTGTCGGCCATGTGATTCTGTATTCCAGGTCATGATTTTATTTGCCAAaacaaaaatctattaaaattattactcATTTAAATCA

Function

symbol description
zgc:65851 Predicted to enable structural molecule activity. Predicted to be located in intermediate filament. Is expressed in nervous system and neural tube.

GO:

id name namespace
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-9669 Predicted to enable structural molecule activity. Predicted to be located in intermediate filament. Is expressed in nervous system and neural tube.

Ensembl:

ensembl_id ENSDARG00000012281

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060074 True 2436 mRNA 0.54 4 13671614 13685047

Neighbor

gene id symbol gene type direction distance location
XLOC_030898 purba coding downstream 25560 13643167 ~ 13646054 (-)
XLOC_030897 si:ch211-230g14.3 coding downstream 106653 13563298 ~ 13564961 (-)
XLOC_030896 AL954191.1 coding downstream 138626 13532874 ~ 13532988 (-)
XLOC_030895 ube2l3b coding downstream 317709 13337507 ~ 13353905 (-)
XLOC_030894 sdf2l1 coding downstream 355888 13308531 ~ 13315726 (-)
XLOC_030900 mxd1 coding upstream 21912 13706959 ~ 13766651 (-)
XLOC_030901 snrnp27 coding upstream 82696 13767743 ~ 13778726 (-)
XLOC_030902 add2 coding upstream 96921 13781968 ~ 13835556 (-)
XLOC_030903 figla coding upstream 154269 13839316 ~ 13848296 (-)
XLOC_030904 npffr1l2 coding upstream 480520 14165567 ~ 14239078 (-)
XLOC_030893 NA non-coding downstream 364909 13277241 ~ 13306705 (-)
XLOC_030888 NA non-coding downstream 835007 12835526 ~ 12836607 (-)
XLOC_030881 BX276096.2 non-coding downstream 1305289 12366209 ~ 12366325 (-)
XLOC_030880 CR735143.1 non-coding downstream 1478600 12192898 ~ 12193014 (-)
XLOC_030905 CR388049.1 non-coding upstream 560102 14245149 ~ 14245280 (-)
XLOC_030911 NA non-coding upstream 1095795 14780842 ~ 15176098 (-)
XLOC_030912 NA non-coding upstream 1314575 14999622 ~ 14999996 (-)
XLOC_030913 CR936518.1 non-coding upstream 1501776 15186823 ~ 15215784 (-)
XLOC_030915 NA non-coding upstream 1622492 15307539 ~ 15310108 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000071_04206342_04211122 NA coding CI01000071 null 4206211 ~ 4211133 (+)
bowfin (Amia calva) AMCG00020831 LOC102225713 coding CM030127.1 CM030127.1 34763193 ~ 34770642 (-)