XLOC_030895 (ube2l3b)


Basic Information

Item Value
gene id XLOC_030895
gene name ube2l3b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 13337507 ~ 13353905 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060067
AAGGTAGACGTCCAAACCTAATACTTTTTTAATCGTAAATAATTACTAATCGCTCACGACGACGCGATGGATGGTTAAACATGAAGTTTCTCTAACCGAAAGGGCGATTCGGACGTTTGTTTAAGCTTAATCTGCGTTAGTACAGGCGGTTCTCTTACTCGATGACTCGGCTCGCTCCGCGTTTCCAAACATGAAGGAGGAAAGCGCCGGTGGAGGCCGCGGGACTCAACAACAGGTTTTTGGGGTCGAGATCGTGGAGGCAGATGGGCAAATAGCATGTTATAgAACTTGAAGAAATCCGCAAGTCTGGGATGAAAAACTTCCGTAACATTCAAGTTGATGAATCAAACATATTGACATGGCAAGGCCTTATTGTTCCAGACAACCCTCCATACGACAAAGGGGCATTCAGGATCGAGATCATCTTCCCTGCAGAATACCCTTTCAAACCACCCAAGATCACGTTCAAAACGAAGATCTACCACCCCAACATTGACGAGAAGGGACAGGTCTGCCTGCCTGTCATTAGTGCAGAGAACTGGAAACCAGCCACCAAAACTGACCAAGtAATCCAGTCGCTCATCGCCCTGGTGAACGACCCACAGCCAGAACACCCTCTGAGGGCCGACCTAGCAGAAGAATACTCAAAAGACCGTAAAAAATTCTTTAAGAACGCAGAAGAGTTTACAAAGAAACACGGCGAAAAGCGGCCAGTGGACTAACAATACCTGACAAGTGTGTAGCCCCAgaccccctcctcctcctccttttctgatCCTCTCCCCCTTCGCTCTGCTACCCAAACGCCATCCTTTATCCCTTCCTCCAGCTTTTCCCCTCCTTCTCCTTTCCACGTGTCACTGTAGTCGAGCTGGAGAAGATCAGCGCCGCTGCAGCCTCCGTCTTGAAGCAGGACGCCCTGAGGACATCCCATCAGTTTCTGCTGTTAGCTTGAGGCCCTTATACTAACTTTCTTACCATGTTGTTCATTTtggttttaatttgttttctttctaaATTTGGTTCGAGGATAACTTAAAAGACACGGAAGTCGGAAGTTGTACTGGGGCGTTTCAGTTGTACATGCTGTTGACCCTTTTTTGTAATGAAATCCAATCATTgcgttgtttattattattattattacacacaaCTTTCGGAAAGTACTTTTTGGAAGTGACAGTTCATTTAAATCTGAATGGATTGTAATTTATcatgtatattattattgttacgtTGTTCCCttgcattttattaacttttttgatttctGCAAAGTGAAAGGAGACGTGTAAGGAGGTCATGCAGCTGGAGGATTTCGGCGACGGCGACAGATTATTTCATATATATCTTTTTACTTTTCACTGCACTTGTTGGGTTGCACCGTATGTCTGAGGAACAGGCTACTTTCAGCCCTTTACCAAGCCTCAAATCGGCAAAACCACTGTAAAGTCTGAAACAAGCGGCGGCTTAAGAGCCGATGTTGCTATGAAATACTTTTGtttcacaaatgaaaaaaaaggaaGGATGAAAACAATGCTCTTTGTGTGAGTGAACGTAATTTTTCCATGATGATCACTaattttaaacatcttttaacaCGTTTCATAGGAAACTCTTGTATATTGTTGATTATTTGGGTTTAAACCTACAAATGGCCCCTAGGATTACGGACATGTGTGCTACTGAGGATTATTACTCCCGTTTTTTTCCCCCCCAGCACAGAATAAACGCAGTAGTTTACCATCAGTTTTCTAGAACATTCTCTTCGAAGTATATTATCCTGTCGGATTTCATCTTAATGGTTCCTTACGCCACTCTTTCTAATGCAAATGGACATTCGGGCTTTCTCTAGTTAAAGATATTCAAGTAATATTTGCTTCTGGATATGGGTGAAGTCTCGCAGTATGCCTCAAAGTTTTTTATTTTCTCGTTAAAGGCTTACTTTTCGGTCATTTAAAAAGCGCTCCAGATTTTGTGTACCAAAATAAAGGAAGACCAAATGCAGGAGAAACTCGGGTTTGATTGACTTTTGGGTTTTTCTTATTGAAGTCAACCGATCCAAATATCTTAAAAGAGCATTACGGATTTTGTGTGATGAAATCAAATCCAATCTTGAGAGTTTAGCGATTTTGTTTAACCTGAATATATTAGCATTAGTGAACTGTATGAAGACTACTAGTTAAACCCCCAAACTTGTTGCTTCAATTACAGCTTATTCTGAATTAAGCCGTCAATGGCCTGAATAACACACACAGGTTATAAACATGTTAACCCTAATATGTGACAAACTCACCAAATAAAGGCTATTTTGACCTAG
>TCONS_00060068
AGCGCGCACGAGCTCATGATTCCATCGCTGCGCCGCGCGGTGCATTCTGGTAGAAGTTGAAAGATTCAAGATGGCGGCGAGCAGGAGACTACACAAGgAACTTGAAGAAATCCGCAAGTCTGGGATGAAAAACTTCCGTAACATTCAAGTTGATGAATCAAACATATTGACATGGCAAGGCCTTATTGTTCCAGACAACCCTCCATACGACAAAGGGGCATTCAGGATCGAGATCATCTTCCCTGCAGAATACCCTTTCAAACCACCCAAGATCACGTTCAAAACGAAGATCTACCACCCCAACATTGACGAGAAGGGACAGGTCTGCCTGCCTGTCATTAGTGCAGAGAACTGGAAACCAGCCACCAAAACTGACCAAGtAATCCAGTCGCTCATCGCCCTGGTGAACGACCCACAGCCAGAACACCCTCTGAGGGCCGACCTAGCAGAAGAATACTCAAAAGACCGTAAAAAATTCTTTAAGAACGCAGAAGAGTTTACAAAGAAACACGGCGAAAAGCGGCCAGTGGACTAACAATACCTGACAAGTGTGTAGCCCCAgaccccctcctcctcctccttttctgatCCTCTCCCCCTTCGCTCTGCTACCCAAACGCCATCCTTTATCCCTTCCTCCAGCTTTTCCCCTCCTTCTCCTTTCCACGTGTCACTGTAGTCGAGCTGGAGAAGATCAGCGCCGCTGCAGCCTCCGTCTTGAAGCAGGACGCCCTGAGGACATCCCATCA
>TCONS_00060069
AGGTAGACGTCCAAACCTAATACTTTTTTAATCGTAAATAATTACTAATCGCTCACGACGACGCGATGGATGGTTAAACATGAAGTTTCTCTAACCGAAAGGGCGATTCGGACGTTTGTTTAAGCTTAATCTGCGTTAGTACAGGCGGTTCTCTTACTCGATGACTCGGCTCGCTCCGCGTTTCCAAACATGAAGGAGGAAAGCGCCGGTGGAGGCCGCGGGACTCAACAACAGGTTTTTGGGGTCGAGATCGTGGAGGCAGATGGGCAAATAGCATGTTATAGTAGGCTTCAGTGTCTTAACCTGTCTCTTCATTCATTGACCgAACTTGAAGAAATCCGCAAGTCTGGGATGAAAAACTTCCGTAACATTCAAGTTGATGAATCAAACATATTGACATGGCAAGGCCTTATTGTTCCAGACAACCCTCCATACGACAAAGGGGCATTCAGGATCGAGATCATCTTCCCTGCAGAATACCCTTTCAAACCACCCAAGATCACGTTCAAAACGAAGATCTACCACCCCAACATTGACGAGAAGGGACAGGTCTGCCTGCCTGTCATTAGTGCAGAGAACTGGAAACCAGCCACCAAAACTGACCAAGtAATCCAGTCGCTCATCGCCCTGGTGAACGACCCACAGCCAGAACACCCTCTGAGGGCCGACCTAGCAGAAGAATACTCAAAAGACCGTAAAAAATTCTTTAAGAACGCAGAAGAGTTTACAAAGAAACACGGCGAAAAGCGGCCAGTGGACTAACAATACCTGACAAGTGTGTAGCCCCAgaccccctcctcctcctccttttctgatCCTCTCCCCCTTCGCTCTGCTACCCAAACGCCATCCTTTATCCCTTCCTCCAGCTTTTCCCCTCCTTCTCCTTTCCACGTGTCACTGTAGTCGAGCTGGAGAA

Function

symbol description
ube2l3b Predicted to enable ubiquitin conjugating enzyme activity and ubiquitin protein ligase binding activity. Predicted to be involved in protein polyubiquitination and ubiquitin-dependent protein catabolic process. Predicted to be part of ubiquitin ligase complex. Predicted to be active in nucleus. Orthologous to human UBE2L3 (ubiquitin conjugating enzyme E2 L3).

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0000209 protein polyubiquitination biological_process
GO:0000151 ubiquitin ligase complex cellular_component
GO:0005634 nucleus cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0031625 ubiquitin protein ligase binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0061631 ubiquitin conjugating enzyme activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-662 Predicted to enable ubiquitin conjugating enzyme activity and ubiquitin protein ligase binding activity. Predicted to be involved in protein polyubiquitination and ubiquitin-dependent protein catabolic process. Predicted to be part of ubiquitin ligase complex. Predicted to be active in nucleus. Orthologous to human UBE2L3 (ubiquitin conjugating enzyme E2 L3).

Ensembl:

ensembl_id ENSDARG00000027141

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060067 False 2320 mRNA 0.41 4 13337507 13353811
TCONS_00060068 False 749 mRNA 0.51 4 13338891 13353905
TCONS_00060069 True 919 mRNA 0.48 4 13338948 13353810

Neighbor

gene id symbol gene type direction distance location
XLOC_030894 sdf2l1 coding downstream 21781 13308531 ~ 13315726 (-)
XLOC_030893 NA coding downstream 30802 13277241 ~ 13306705 (-)
XLOC_030892 top3b coding downstream 85600 13211452 ~ 13251907 (-)
XLOC_030891 ppm1f coding downstream 130629 13181029 ~ 13206878 (-)
XLOC_030890 mapk1 coding downstream 170387 13104851 ~ 13167120 (-)
XLOC_030896 AL954191.1 coding upstream 178969 13532874 ~ 13532988 (-)
XLOC_030897 si:ch211-230g14.3 coding upstream 209393 13563298 ~ 13564961 (-)
XLOC_030898 purba coding upstream 289262 13643167 ~ 13646054 (-)
XLOC_030899 zgc:65851 coding upstream 317709 13671614 ~ 13685047 (-)
XLOC_030900 mxd1 coding upstream 353054 13706959 ~ 13766651 (-)
XLOC_030888 NA non-coding downstream 500900 12835526 ~ 12836607 (-)
XLOC_030881 BX276096.2 non-coding downstream 971182 12366209 ~ 12366325 (-)
XLOC_030880 CR735143.1 non-coding downstream 1144493 12192898 ~ 12193014 (-)
XLOC_030876 castor1 non-coding downstream 1305586 11982364 ~ 12031921 (-)
XLOC_030905 CR388049.1 non-coding upstream 891244 14245149 ~ 14245280 (-)
XLOC_030911 NA non-coding upstream 1426937 14780842 ~ 15176098 (-)
XLOC_030912 NA non-coding upstream 1645717 14999622 ~ 14999996 (-)
XLOC_030913 CR936518.1 non-coding upstream 1832918 15186823 ~ 15215784 (-)

Expression


Co-expression Network