RNA id: TCONS_00060068


Basic Information

Item Value
RNA id TCONS_00060068
length 749
RNA type mRNA
GC content 0.51
exon number 4
gene id XLOC_030895
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 13337507 ~ 13353905 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCGCGCACGAGCTCATGATTCCATCGCTGCGCCGCGCGGTGCATTCTGGTAGAAGTTGAAAGATTCAAGATGGCGGCGAGCAGGAGACTACACAAGgAACTTGAAGAAATCCGCAAGTCTGGGATGAAAAACTTCCGTAACATTCAAGTTGATGAATCAAACATATTGACATGGCAAGGCCTTATTGTTCCAGACAACCCTCCATACGACAAAGGGGCATTCAGGATCGAGATCATCTTCCCTGCAGAATACCCTTTCAAACCACCCAAGATCACGTTCAAAACGAAGATCTACCACCCCAACATTGACGAGAAGGGACAGGTCTGCCTGCCTGTCATTAGTGCAGAGAACTGGAAACCAGCCACCAAAACTGACCAAGtAATCCAGTCGCTCATCGCCCTGGTGAACGACCCACAGCCAGAACACCCTCTGAGGGCCGACCTAGCAGAAGAATACTCAAAAGACCGTAAAAAATTCTTTAAGAACGCAGAAGAGTTTACAAAGAAACACGGCGAAAAGCGGCCAGTGGACTAACAATACCTGACAAGTGTGTAGCCCCAgaccccctcctcctcctccttttctgatCCTCTCCCCCTTCGCTCTGCTACCCAAACGCCATCCTTTATCCCTTCCTCCAGCTTTTCCCCTCCTTCTCCTTTCCACGTGTCACTGTAGTCGAGCTGGAGAAGATCAGCGCCGCTGCAGCCTCCGTCTTGAAGCAGGACGCCCTGAGGACATCCCATCA

Function

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0000209 protein polyubiquitination biological_process
GO:0000151 ubiquitin ligase complex cellular_component
GO:0005634 nucleus cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0031625 ubiquitin protein ligase binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0061631 ubiquitin conjugating enzyme activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-662 Predicted to enable ubiquitin conjugating enzyme activity and ubiquitin protein ligase binding activity. Predicted to be involved in protein polyubiquitination and ubiquitin-dependent protein catabolic process. Predicted to be part of ubiquitin ligase complex. Predicted to be active in nucleus. Orthologous to human UBE2L3 (ubiquitin conjugating enzyme E2 L3).

Ensembl:

ensembl_id ENSDART00000004539

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061956 lncRNA downstream 32186 13277241 ~ 13306705 (-) True XLOC_030893
TCONS_00060062 lncRNA downstream 171771 13131399 ~ 13167120 (-) True XLOC_030890
TCONS_00061527 lncRNA downstream 502284 12835526 ~ 12836607 (-) True XLOC_030888
TCONS_00060040 lncRNA downstream 1058764 12272137 ~ 12280127 (-) False XLOC_030879
TCONS_00061955 lncRNA downstream 1058952 12272137 ~ 12279939 (-) False XLOC_030879
TCONS_00061528 lncRNA upstream 1167217 14521122 ~ 14522712 (-) True XLOC_030909
TCONS_00061957 lncRNA upstream 1426937 14780842 ~ 15176038 (-) False XLOC_030911
TCONS_00061958 lncRNA upstream 1643357 14997262 ~ 15176098 (-) False XLOC_030911
TCONS_00061529 lncRNA upstream 1645717 14999622 ~ 14999996 (-) True XLOC_030912
TCONS_00061959 lncRNA upstream 1653700 15007605 ~ 15175900 (-) False XLOC_030911
TCONS_00060066 mRNA downstream 23165 13308531 ~ 13315726 (-) True XLOC_030894
TCONS_00060064 mRNA downstream 86984 13211452 ~ 13251907 (-) False XLOC_030892
TCONS_00060065 mRNA downstream 86984 13212960 ~ 13251907 (-) True XLOC_030892
TCONS_00060063 mRNA downstream 132013 13181029 ~ 13206878 (-) True XLOC_030891
TCONS_00060060 mRNA downstream 171794 13110883 ~ 13167097 (-) False XLOC_030890
TCONS_00060071 mRNA upstream 209393 13563298 ~ 13564961 (-) True XLOC_030897
TCONS_00060072 mRNA upstream 289262 13643167 ~ 13646054 (-) False XLOC_030898
TCONS_00060073 mRNA upstream 290191 13644096 ~ 13645995 (-) True XLOC_030898
TCONS_00060074 mRNA upstream 317709 13671614 ~ 13685047 (-) True XLOC_030899
TCONS_00060075 mRNA upstream 353054 13706959 ~ 13766651 (-) True XLOC_030900
TCONS_00060061 other downstream 218298 13110935 ~ 13120593 (-) False XLOC_030890
TCONS_00060054 other downstream 613576 12724462 ~ 12725315 (-) True XLOC_030886
TCONS_00060044 other downstream 965994 12353721 ~ 12372897 (-) False XLOC_030879
TCONS_00060045 other downstream 972566 12366209 ~ 12366325 (-) True XLOC_030881
TCONS_00060039 other downstream 1145877 12192898 ~ 12193014 (-) True XLOC_030880
TCONS_00060070 other upstream 178969 13532874 ~ 13532988 (-) True XLOC_030896
TCONS_00060083 other upstream 891244 14245149 ~ 14245280 (-) True XLOC_030905
TCONS_00060087 other upstream 1014195 14368100 ~ 14372936 (-) True XLOC_030906
TCONS_00060102 other upstream 1868110 15222015 ~ 15223457 (-) False XLOC_030914
TCONS_00060112 other upstream 2380620 15734525 ~ 15734580 (-) True XLOC_030920

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00018622 True 4088 mRNA 0.38 4 CM030135.1 15648519 ~ 15657455 (-)