XLOC_003091 (purbb)


Basic Information

Item Value
gene id XLOC_003091
gene name purbb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 44979533 ~ 44981295 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005653
CCGCGCTGGAGTGTGTGAGGGAGAAGCTGCTGGAGGTGCTGAAGATGGCGGATGGAGACAGCGGGAGCGAGCGCGGCGGCAGCAGCGGCGGCCTCCAGCACTTCCAGCGGGAGCAGGAGACGCAGGAGCTGGCCTCCAAGCGCCTGGACATCCAGAACAAGCGCTTCTACCTGGACGTCAAGCAGAACGCGAAGGGCCGCTTCATTAAGATAGCGGAGGTGGGCGCCGGGGGCTCCAAGAGCCGCCTGACTCTCTCCATGTCCGTGGCGGCGGAGTTCCGCGACTACCTCGGGGATTTCATCGAGCACTACGCCCAGCTGGGGCCCAGCAGCCCGGAGCAGATCGCGCAGTCGTCCGGGGGCGATGATGGAGGACCGCGCCGGGCGCTGAAGAGCGAGTTTTTGGTGCGAGAGAACCGCAAATACTACCTCGACCTGAAGGAGAACCAGCGCGGGAGGTTCCTGCGCATCCGCCAGACCGTCAACCGTGGACCGGGATTCGGAGTCGGCGGGGGAGGCGGGCCGGGAGGCGGCGTGCAGGCCGGACAGACCATCGCGCTGCCGGCGCAGGGATTAATCGAGTTCCGGGATGCGCTCGCGAAACTGATCGACGACTACGGCGGAGAGGATGAAGAGCTGAGTGGGGGTCCCGGAGCCGCGGGGGGCTACGGGGAGCTCCCGGAGGGCACCTCCATCATGGTGGACTCCAAGCGCTTCTTCTTCGACGTGGGCTCCAACAAATACGGCGTGTTCCTGAGGGTCAGCGAGGTCAAGCCCAGCTACAGGAACTCCATCACCATCCCGTTCAAGGCCTGGGGGAAGTTTGGAGGAGCCTTCAGCCGCTACGCCGAGGAGATGAAGGAGATCCAGGAGCGACACCGCGATAAGATGTACGAGCGCAGAGAGGAGTCCGAGGGAGAGGATGTGGACGACGACTGACCGGACGAGCGGAACAACAAGTGCATGAACTCCAATAGCCTACTAAAATATTGATGGGACAGAAAAGTAGATCTGTGAAGTCTCTGTGGTGAGGGTTTGGGGAGGGGGGGTCTGTGTTGGAGCCCTGAGGATGGGGTCTGATTTATTCCTGATGCTGCCCGGCCCTGTCAAACCAGCAAGTTTAATTGTCTTTGCCCACAATTAAACCTTTGTTACATCCGGCTGCTGAATTTCTACAAGCGGAACATGTGTGATCGAACCAGGCGATGATAAGGGTGCATTACTGTCCAACATGTGTTTTCAGAGGGGAGATGTTtagtatatatgttatatatagcgTCACTGGTCTTCATGGTGTGTAGGCAGCATGGGACTTTCGCAACcaaaagttgtgtgtgtgtgtgtgttgagattATTTTATAGTAGATGTTCCCTAAGTTATTCTGTTTGGGTTTGCGTTCACGCATCGACACACGACTTTGAATGAGTGCTGATTTTGGTTTGACCGCTGGTTTTGTGTTGATGGAGGTTTTTAAAGCACCAGTTCCTAAAAGAGGCGTGAGCTATTTGATGGAAAAACTAATAATTGATATTATGGACCGTGagatattttggttttggggtcaaATATGACaagctttgtcttttttttttttttgacttgggTCCAAGTCTCTGAATATTGATGTGTGATATTAGTTATTATAGAGGACAGAGCTTTGCGGGGGAGTGTATTTTCACTCCATCCCCttctgtgttgtgtttttttaatgtaagatcATTCTTTATGagagaataagtaaataaaccagCATATTTTTGAAT

Function

symbol description
purbb Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II transcription regulatory region sequence-specific DNA binding activity; and purine-rich negative regulatory element binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human PURB (purine rich element binding protein B).

GO:

id name namespace
GO:0030154 cell differentiation biological_process
GO:0008283 cell population proliferation biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0001227 DNA-binding transcription repressor activity, RNA polymerase II-specific molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0032422 purine-rich negative regulatory element binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1478 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II transcription regulatory region sequence-specific DNA binding activity; and purine-rich negative regulatory element binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human PURB (purine rich element binding protein B).

Ensembl:

ensembl_id ENSDARG00000103546

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005653 True 1763 mRNA 0.54 1 44979533 44981295

Neighbor

gene id symbol gene type direction distance location
XLOC_003090 NA coding downstream 2890 44974236 ~ 44976643 (-)
XLOC_003089 tuba7l coding downstream 55244 44917351 ~ 44924289 (-)
XLOC_003088 tacr1b coding downstream 190979 44769050 ~ 44788554 (-)
XLOC_003087 npm2b coding downstream 419231 44552548 ~ 44560302 (-)
XLOC_003086 CABZ01072083.2 coding downstream 462347 44513231 ~ 44517186 (-)
XLOC_003092 ved coding upstream 15767 44997062 ~ 45002196 (-)
XLOC_003093 polm coding upstream 33930 45015225 ~ 45029041 (-)
XLOC_003094 NA coding upstream 65934 45047229 ~ 45051538 (-)
XLOC_003095 mrps24 coding upstream 72282 45053577 ~ 45058886 (-)
XLOC_003096 pargl coding upstream 224112 45205407 ~ 45230081 (-)
XLOC_003084 CABZ01072084.1 non-coding downstream 477814 44493919 ~ 44501719 (-)
XLOC_003080 NA non-coding downstream 591731 44380918 ~ 44387802 (-)
XLOC_003076 CABZ01074708.1 non-coding downstream 703648 44268481 ~ 44275885 (-)
XLOC_003075 CABZ01085662.1 non-coding downstream 726429 44242236 ~ 44253104 (-)
XLOC_003097 NA non-coding upstream 374329 45355624 ~ 45357482 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000204_00392220_00393113 PURBB, PURB, PURBA, PURB.L coding CI01000204 null 391676 ~ 393358 (+)
bowfin (Amia calva) AMCG00020857 purb,LOC104936618 coding CM030127.1 CM030127.1 35171052 ~ 35172101 (+)