XLOC_003093 (polm)


Basic Information

Item Value
gene id XLOC_003093
gene name polm
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 45015225 ~ 45029041 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005655
TGAAGCTTATAGAAGAGTCCAAAACAACACCGCGGTGAACGGATACATTTCCCGGTTATGATCCCGTTAAAGCGCAGGAAAGTGTCTGTGCCGGTAAAACAGCAGACTGGCAGCTGTAAATATCCTCAGGTCTGCATCTTCATCCTGGAGAGGAAAATGGGAGCGTCTAGAAGAGCGTTTCTCACCCGGTTAGGAAGAAGCAAAGGGTTTCTCATTGAAGACTCGTACAGCTCCTCTGTTACTCATGTGGTGTCGGAGAACAGCAGCGCAGCAGAGGTTCAGGCCTGGCTGGAGAAACACACACGCGCCTCTTCCTCCGATCACCTGCTGGAGAAGCACACACACGCAGCCTCATCCTCATCTGTTCACCTGCTGGACATCTGCTGGTTCACGGAGAGCATGGAGGCCGGTGAGCCCGTACCtgtgcagcacacacacacactgcagATTAACCCAGAGCTCAACGGCGATGGCGCTGAAATACTGATGAAAAGTTACGCCTGTCAAAGACGAACGCCTCTAAAGCACCACAATGCATTCCTGACGGAAGCTCTTGAAATCTTGGCTCAGAATGCAGAGTTTAATGATAATGAGGGCCGAAGCGTGGCGTTCAGACGAGCGGCTTCAGTCCTGAAGGCTCTCCCACATCGGGTGAAGAGTATGGAGGATCTGCGGTGTTTGCCCTGCCTTGGGGATCATTCACAGAGGGTTATAAAGGAGATTTTAGAAGACGGTTCATCAAGAGAAGTGGAGTCAACAAGACAGTCGGAGCAGTTTCAGGCCATGAAGGCTCTGACTGGTGTTTTCGGGGTCGGTGTGCGGACGGCTGATCGCTGGATTAGAGAAGGTTTACGAACTCCAGATGATTTAATTCGCACAGGACAACAGCTGAACCGTGCACAGCAAGCAGGTGTGCAGTATTACTCTGAGCTCCAGCGGGCGGTGACGCGGGCGGAGGCTGAGCTGATCATGGCTATAGTGGAGGCGGCTGTGAATTCGGTGCTGCCTGGATGTCAGATCCAGCTCATGGGCGGCTTCAGGAGGGGGAAGGAAGTTGGTCATGATGTGGACTTTCTCATCACACATCCGGAGGAGGGAAAGGAGGAAGGACTGATGTTGAAAATCATCAGCTGGCTGGAGGAGCAGGGTGTGCTGCTGTATCAGAAGACCACCAGAAACTCGTATGTGGAGCGTCTGGATGGGCCGGCGCGCTCAGCCAGCAACATGGACCGATTTGAGAGATGTTTCTCCATCTTTAAACTTCACTCATCTGCATCTCGATCTGGATCTGCATCTACATCTGAATCTGGATCTGCATGTGACAGCGGCTGCAGAGCGGTGCGGGTGGATCTGGTGGTCAGTCCCTTCAGTCAGTTTGCCTTCGCCACGCTCGGGTGGACCGGATCAAAGCTGTTTGAGCGGGAGTTGAGGAGGTGGGCGGGGCAAGAGAAGCAGATGACCTTGAGTAGCCACACCCTCTACGACAGCAAACAGAATCTGTACCTCCGGGCACAAACAGAAGAGGAGATATTTGCACATTTGGGTCTGGAGTTTATTCCTCCGTCCGAACGCAACGCCTGAAGCCCAGTTCCTCCCAGTATCAGCTCCGTTATGATGGGTGTTCTGCAACATTATGATGCACACTCTTTGTAAATGCTGAACAGGAATGAGAAAGACTCTCGTAGTGTTTTACCTGAGACTGCTTCTGGATATAAGGAAGATGATCATCTGACACAATCTGAtgctttatttgattaaatatgtgAATGAAAGCTCA

Function

symbol description
polm Predicted to enable DNA-directed DNA polymerase activity. Predicted to be involved in double-strand break repair via nonhomologous end joining. Predicted to act upstream of or within DNA repair. Predicted to be active in nucleus. Is expressed in pleuroperitoneal region and thymus. Orthologous to human POLM (DNA polymerase mu).

GO:

id name namespace
GO:0006303 double-strand break repair via nonhomologous end joining biological_process
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0003887 DNA-directed DNA polymerase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016779 nucleotidyltransferase activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0034061 DNA polymerase activity molecular_function

KEGG:

id description
ko03450 Non-homologous end-joining
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-040426-911 Predicted to enable DNA-directed DNA polymerase activity. Predicted to be involved in double-strand break repair via nonhomologous end joining. Predicted to act upstream of or within DNA repair. Predicted to be active in nucleus. Is expressed in pleuroperitoneal region and thymus. Orthologous to human POLM (DNA polymerase mu).

Ensembl:

ensembl_id ENSDARG00000103470

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005655 True 1777 mRNA 0.52 11 45015225 45029041

Neighbor

gene id symbol gene type direction distance location
XLOC_003092 ved coding downstream 13029 44997062 ~ 45002196 (-)
XLOC_003091 purbb coding downstream 33930 44979533 ~ 44981295 (-)
XLOC_003090 NA coding downstream 38582 44974236 ~ 44976643 (-)
XLOC_003089 tuba7l coding downstream 90936 44917351 ~ 44924289 (-)
XLOC_003088 tacr1b coding downstream 226671 44769050 ~ 44788554 (-)
XLOC_003094 NA coding upstream 18188 45047229 ~ 45051538 (-)
XLOC_003095 mrps24 coding upstream 24536 45053577 ~ 45058886 (-)
XLOC_003096 pargl coding upstream 176366 45205407 ~ 45230081 (-)
XLOC_003097 NA coding upstream 326583 45355624 ~ 45357482 (-)
XLOC_003098 CABZ01117348.1 coding upstream 342003 45371044 ~ 45379831 (-)
XLOC_003084 CABZ01072084.1 non-coding downstream 513506 44493919 ~ 44501719 (-)
XLOC_003080 NA non-coding downstream 627423 44380918 ~ 44387802 (-)
XLOC_003076 CABZ01074708.1 non-coding downstream 739340 44268481 ~ 44275885 (-)
XLOC_003075 CABZ01085662.1 non-coding downstream 762121 44242236 ~ 44253104 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000204_00361326_00370615 POLM coding CI01000204 null 361326 ~ 371385 (+)