XLOC_003092 (ved)


Basic Information

Item Value
gene id XLOC_003092
gene name ved
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 44997062 ~ 45002196 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005654
acacacacacacacaggacagcTCCAGCATGAAGGGTCAGTTCTCCATCGAGTGGCTTTCTCAGAGCAGCTCATCGGTCAGAGACGAACAGCAGACATCCAGCACCAGCACAGACAGCCTGCCAGGCTCCTACAGCCGCTGGACCAGCCCGCACATGGAGAAACATATGGAGGAGAAATATACAGAGGAGAAATACCTGCAGGAGAAAAGCATGGAGAAATTCATGCATGAAAAATATACAGAGGAGAAACACATGCCGGAGAAATACACGGAGGGGAAACGcatccagaaacacacacacgAGTCTGGCTTCAGCAGCAGCACAGAAGATGAGGAGTTGTCCGGCTGTGAGAGTGAAGGCTCCCGCAGTGAAGGCTCAGGCTCTCGGTCCCCTGCAGCTCCTGGATCTGTGGCTCCGGCTTCAGGCTCCGGGTCTCCCTCTAGTGGCCGGCGGCCGCGCACCGCCTTCAGCAGCGAGCAGATCAGCAGTCTGGAGCGAGTCTTTAAGAGGAACGCGTATCTGGGGGCGCAGGACAAGGCGGAGCTCTGCAGAACACTCAAACTCACCGACAAACAGATCAGAAACTGGTTCCAGAACCGGCGCATGAAGCTAAAGCGGACGGTTCAGGACAGTCTGGCTCAGGCCTGTCAGGTGAAGGTGGCGTCTCACATGATGCATTATTCAGATCTGCACAGTTTCAGAGCCGCTCCGTATCCCAGTTTCTACCCGGAGACTCCAGCAGCGTTCGCACCCCCGTATCCCATCAGCCCCGCAGCAGAGAGCCTGTATTACAGCAGCTACCAGAACCTCCAGGGCGTCCCGAGCATCCCCGTACATCCCTACCAGTATTACAGCACACACTGACGGATGACACACAGCGGGACGGCGTGCAATAATGATAGTAACAGCACAGGACTGGCTTTATTGTGCTGAGGAATTATTTAAAGATGTAAATCTGGAGGGAACAGAAGCTCTATTTTCCTGCAGGAGTGGATTAATAAAGTGCTTTCTATTTGACTACA

Function

symbol description
ved Predicted to enable sequence-specific double-stranded DNA binding activity. Acts upstream of or within several processes, including Spemann organizer formation; post-anal tail morphogenesis; and regulation of cell fate specification. Predicted to be active in nucleus. Is expressed in several structures, including EVL; margin; periderm; superficial blastomere; and ventral mesoderm.

GO:

id name namespace
GO:0036342 post-anal tail morphogenesis biological_process
GO:0031018 endocrine pancreas development biological_process
GO:0048812 neuron projection morphogenesis biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0007417 central nervous system development biological_process
GO:0042661 regulation of mesodermal cell fate specification biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:0060061 Spemann organizer formation biological_process
GO:0021520 spinal cord motor neuron cell fate specification biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030813-1 Predicted to enable sequence-specific double-stranded DNA binding activity. Acts upstream of or within several processes, including Spemann organizer formation; post-anal tail morphogenesis; and regulation of cell fate specification. Predicted to be active in nucleus. Is expressed in several structures, including EVL; margin; periderm; superficial blastomere; and ventral mesoderm.

Ensembl:

ensembl_id ENSDARG00000102389

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005654 True 1023 mRNA 0.54 3 44997062 45002196

Neighbor

gene id symbol gene type direction distance location
XLOC_003091 purbb coding downstream 15767 44979533 ~ 44981295 (-)
XLOC_003090 NA coding downstream 20419 44974236 ~ 44976643 (-)
XLOC_003089 tuba7l coding downstream 72773 44917351 ~ 44924289 (-)
XLOC_003088 tacr1b coding downstream 208508 44769050 ~ 44788554 (-)
XLOC_003087 npm2b coding downstream 436760 44552548 ~ 44560302 (-)
XLOC_003093 polm coding upstream 13029 45015225 ~ 45029041 (-)
XLOC_003094 NA coding upstream 45033 45047229 ~ 45051538 (-)
XLOC_003095 mrps24 coding upstream 51381 45053577 ~ 45058886 (-)
XLOC_003096 pargl coding upstream 203211 45205407 ~ 45230081 (-)
XLOC_003097 NA coding upstream 353428 45355624 ~ 45357482 (-)
XLOC_003084 CABZ01072084.1 non-coding downstream 495343 44493919 ~ 44501719 (-)
XLOC_003080 NA non-coding downstream 609260 44380918 ~ 44387802 (-)
XLOC_003076 CABZ01074708.1 non-coding downstream 721177 44268481 ~ 44275885 (-)
XLOC_003075 CABZ01085662.1 non-coding downstream 743958 44242236 ~ 44253104 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000204_00380801_00383770 NA coding CI01000204 null 380613 ~ 383984 (+)