XLOC_003097


Basic Information

Item Value
gene id XLOC_003097
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 45355624 ~ 45357482 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006139
TAGTGTATAAGTTCATTAGTGTATACTGCATTAGTATATAAATGCATAAagtatagtgtataagtgtaaagTGAATAAGTGTATAAGTTCATTAGTGTATAAGTTCATTAGTGTATAGTGCATTAGTGTTTAAGTGTATAGtatatgagtgtatgtgtatCATTTGGGATGTAACTCATGTTTTAAGACGGGAGCTAAACGTGTGTGTTTTTGATGACAGGTGGTGTTTAAGGATGAAGCGGTGGATGAACATGTGGTAACGTGTGCAGTGTGTCTGGAGGACTTCAGGATGAGCGATGAGCTGGGTCTGTTGGCCTGTAAACATGCCTTTCACAAGCGGTGTCTGCTGGACTGGCTAGAGATCCGCTGCTCCTGTCCAATGTGCAACATTCCTATCAGCGGGGACACGGCAGAAAACCAGCCTGCAAACCTGCTGGATGAGCTGATGTAAACCTGAAGCAAACATGCCTTAAAACTGAGGAAAACCTCCTGTAAACCTGCTAGACAAGCTTATGTAAACCTGAAGCAAACCTGCTGGAAAAGCTGAGGTAAACCTGAGGAAAACCTGCTGTAAACCCGCTAGACAAGCTGATGAAAACCTACTGGACGAGCTGATGAAAACCTGAGGTAAACCTGCTAGACAAGCTTATGTAAACCTTAAGCAAACCTGCTTGACAAGCTGAGGAAAACCTGCTGTAAATATGCTGGCAGAGCTGATGGAAACCTGATGTAAACCTGGGTTTACTCTGACTTCACTCTCAGTGGCATGTATATACAGTAATATTATAAACAAACTGAACTAATCACTGGACCCTTCACACAAGACTGAGTTCTTTAAAGGGttatgacaccccccactttcagttcaggtctacctcagaatttaaaaaaaaagatgcatcataatgggcggagctacgcgagcaaagggcaggagtgggcgtggcctgCAGAGGAGAAGAAGGGGagtaaacaactgttgtcagtcggttcacaaaatgagacacaaaccgtgaggagatgcatgagttaatagtttacaaagt

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0048468 cell development biological_process
GO:0007219 Notch signaling pathway biological_process
GO:0008152 metabolic process biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043009 chordate embryonic development biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0048513 animal organ development biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0030182 neuron differentiation biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0048869 cellular developmental process biological_process
GO:0045595 regulation of cell differentiation biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0050767 regulation of neurogenesis biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0007399 nervous system development biological_process
GO:0032501 multicellular organismal process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0060284 regulation of cell development biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0022008 neurogenesis biological_process
GO:0030902 hindbrain development biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0048699 generation of neurons biological_process
GO:0051094 positive regulation of developmental process biological_process
GO:0021510 spinal cord development biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0051960 regulation of nervous system development biological_process
GO:0044391 ribosomal subunit cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0043226 organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006139 True 1046 lncRNA 0.43 3 45355624 45357482

Neighbor

gene id symbol gene type direction distance location
XLOC_003096 pargl coding downstream 125543 45205407 ~ 45230081 (-)
XLOC_003095 mrps24 coding downstream 296738 45053577 ~ 45058886 (-)
XLOC_003094 NA coding downstream 304086 45047229 ~ 45051538 (-)
XLOC_003093 polm coding downstream 326583 45015225 ~ 45029041 (-)
XLOC_003092 ved coding downstream 353428 44997062 ~ 45002196 (-)
XLOC_003098 CABZ01117348.1 coding upstream 13562 45371044 ~ 45379831 (-)
XLOC_003090 NA non-coding downstream 378981 44974236 ~ 44976643 (-)
XLOC_003084 CABZ01072084.1 non-coding downstream 853905 44493919 ~ 44501719 (-)
XLOC_003080 NA non-coding downstream 967822 44380918 ~ 44387802 (-)
XLOC_003076 CABZ01074708.1 non-coding downstream 1079739 44268481 ~ 44275885 (-)

Expression


Co-expression Network