XLOC_030987


Basic Information

Item Value
gene id XLOC_030987
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 21926822 ~ 21934278 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00061987
GGACGCAACAGCAATGTGACGTTCGAGTCTCATACATCAGTTGTGAAAAACAGCTGTTGCTTTCAGggaattatttcaaaataaaggtACCAATGAGTGCACATGTTAAGAAGTCTTTAAGGTTTTGACTGACGGACATCCTTCCACTCCATCTTGGTGCTTTGTAAAGCCTGGGTCTTCTTCTCATCTACCTTCACATAGTCCACCCTGTATTCGTCTGCCAGCAATGGTTTCTGAAAGCATCAACAATACAAACATGAATAAGCATGACTAACCGTTATCAAAACTGCAGGCAGATTTTGCGCCGTGTCATGTTTATAGCTGAGCGATGATGATAAAGCCACCAAAACAGGAAATACTGAGTCAATGAAGATTCATGATGGGCACCAGAAAGGATCATTTTGGCAGATAGCACTAAAacgcaacacacaaacacacactaaatgAATGTTTGTAATGGAGTCCTTTTTGACCAAGTCTACCACTGACCTTCTGGACAGGTGACGGAGAGGCAGAGTTGAAGTCAAGTGACAAGTAATCCAGCTGAGAAGGCCTCATCCAGGGAGCAGAGTCACAAGATGGAAACAACATCTGCCGAGAGTCCTGGACAAAGGAAAACGCATGTGCCTGACCTGAAAGAACCCTGTTCCTGCTCTCAAGACACAAAGCTGCTGTCTGTGGTTCCTGCTCTGTGTCTCTGACCCGACCGTGCTCTTCCTCTCATGCTTTTGTCTAGctagcttaaagggatagttcatccaaaaataacaatttactCACTctgtactcaccctcaagtggttcctaacctttatgagtttctttcttttgctgaacacaaaagccattttaaagaaagctgaaaacctgacaTCCGTAGTAGGACAAACAAATGGtaaaaagtcaatggctacatgcttccaacattattcaaaagatcttcttttgtgtttaacagaagaaagaaactcttaaaggtttgaaatgcgtaaatggtgagtaaataatgagagttttcatgtttgggtgaactatccctttaaatgatcaGTTTCAAAGTAATGTAAGAATTTCACACATACTGTTTACAGTTGTGACCAACACACACAAGCAGGCTACACCCTGTTTGAACATTAAGATGCTTATCTATTTCTCACAGTAATATAATTGTAAAGcagggtgtctgtggggtcttaaaaattattaaaagttgacAAATCAATTATGAGTAAATTAAGGctcttaaaagttattaaaaagtcttaattttgtttttacgaggtcttaaattttgttcaagttttTTCCAAAGTGTTTcactccaaaataaaaatgtttgacttcacaaatataattattttactcctaatattaacaatggcACGCTCGATCCATGCAATTGGTTCGGTCCGG
>TCONS_00061988
catcaagtagagaggcttctgTTAAGATGTTTGTTTGACTGTTAATCAATATCCAGCCAACTGGGAAGactttaaatcacattttctgtgttatattttatctgcaacaacaatactgaacttatataaagacgtgGTTGGACATTAACATCTGAATGGATAATGATCCAAAGACCTGatgagatttctctgcatgaaataTTAACCTGCTGCTGTTTCTCCagtaaggtaggaaattaaatataatgGAAATGTGGAtaatgtgtggatgattgacagggatcataactaagcaacacaacgatctgttaaATGTTATCTTTTTGATTGggaaaaagtgtaatggtcaatatggtgaaggagccaatcatcgatcgctatatgcCGAATAatgcccgccttctagtacaggagccaatcatcgatcgctattgTCTGCCAATACTCTGAaggaggggctcggaccagagAAGTCTTTAAGGTTTTGACTGACGGACATCCTTCCACTCCATCTTGGTGCTTTGTAAAGCCTGGGTCTTCTTCTCATCTACCTTCACATAGTCCACCCTGTATTCGTCTGCCAGCAATGGTTTCTGAAAGCATCAACAATACAAACATGAATAAGCATGACTAACCGTTATCAAAACTGCAGGCAGATTTTGCGCCGTGTCATGTTTATAGCTGAGCGATGATGATAAAGCCACCAAAACAGGAAATACTGAGTCAATGAAGATTCATGATGGGCACCAGAAAGGATCATTTTGGCAGATAGCACTAAAacgcaacacacaaacacacactaaatgAATGTTTGTAATGGAGTCCTTTTTGACCAAGTCTACCACTGACCTTCTGGACAGGTGACGGAGAGGCAGAGTTGAAGTCAAGTGACAAGTAATCCAGCTGAGAAGGCCTCATCCAGGGAGCAGAGTCACAAGATGGAAACAACATCTGCCGAGAGTCCTGGACAAAGGAAAACGCATGTGCCTGACCTGAAAGAACCCTGTTCCTGCTCTCAAGACACAAAGCTGCTGTCTGTGGTTCCTGCTCTGTGTCTCTGACCCGACCGTGCTCTTCCTCTCATGCTTTTGTCTAGctagcttaaagggatagttcatccaaaaataacaatttactCACTctgtactcaccctcaagtggttcctaacctttatgagtttctttcttttgctgaacacaaaagccattttaaagaaagctgaaaacctgacaTCCGTAGTAGGACAAACAAATGGtaaaaagtcaatggctacatgcttccaacattattcaaaagatcttcttttgtgtttaacagaagaaagaaactcttaaaggtttgaaatgcgtaaatggtgagtaaataatgagagttttcatgtttgggtgaactatccctttaaatgatcaGTTTCAAAGTAATGTAAGAATTTCACACATACTGTTTACAGTTGTGACCAACACACACAAGCAGGCTACACCCTGTTTGAACATTAAGATGCTTATCTATTTCTCACAGTAATATAATTGTAAAGcagggtgtctgtggggtcttaaaaattattaaaagttgacAAATCAATTATGAGTAAATTAAGGctcttaaaagttattaaaaagtcttaattttgtttttacgaggtcttaaattttgttcaagttttTTCCAAAGTGTTTcactccaaaataaaaatgtttgacttcacaaatataattattttactcctaatattaacaatggcACGCTCGATCCATGCAATTGGTTCGGTCCGG

Function

GO:

id name namespace
GO:0006302 double-strand break repair biological_process
GO:0016070 RNA metabolic process biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0006259 DNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0006281 DNA repair biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
ko03050 Proteasome
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00061987 False 1413 lncRNA 0.39 3 21926822 21933493
TCONS_00061988 True 1773 lncRNA 0.39 3 21926822 21934278

Neighbor

gene id symbol gene type direction distance location
XLOC_030986 smarca1 coding downstream 38454 21852714 ~ 21888368 (-)
XLOC_030984 NA coding downstream 74595 21609358 ~ 21852227 (-)
XLOC_030985 CR848717.1 coding downstream 189477 21736359 ~ 21737345 (-)
XLOC_030983 tenm1 coding downstream 402571 21295747 ~ 21524251 (-)
XLOC_030982 BX470224.4 coding downstream 633577 21293130 ~ 21293245 (-)
XLOC_030988 arhgef9a coding upstream 5455 21939733 ~ 22001053 (-)
XLOC_030989 amer1 coding upstream 77297 22011575 ~ 22019061 (-)
XLOC_030990 asb12a coding upstream 86864 22021142 ~ 22027357 (-)
XLOC_030991 mtmr8 coding upstream 93310 22027588 ~ 22052852 (-)
XLOC_030992 zc4h2 coding upstream 139432 22073710 ~ 22082918 (-)
XLOC_030981 NA non-coding downstream 684738 21239333 ~ 21242084 (-)
XLOC_030973 NA non-coding downstream 1307483 20616071 ~ 20619339 (-)
XLOC_030993 CR812469.1 non-coding upstream 153378 22087656 ~ 22096908 (-)
XLOC_030995 NA non-coding upstream 296412 22230690 ~ 22235158 (-)
XLOC_030997 BX546499.2 non-coding upstream 501508 22435786 ~ 22438595 (-)
XLOC_030998 NA non-coding upstream 519552 22453830 ~ 22455994 (-)
XLOC_030999 NA non-coding upstream 521288 22455566 ~ 22457289 (-)

Expression


Co-expression Network