XLOC_030984


Basic Information

Item Value
gene id XLOC_030984
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 21609358 ~ 21852227 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00061982
CGCGTTTCTGGCCACGTGGGCGCGCTGTTGTACTTTGCTCGTTCCCGCCAGCGCGCGACACCTCATTCTCCCAGTCTGGCTGTTTAGTGTGTAACACGCGCCCTCACACTTTCTGTCACACACTCCAACAACGTGAGTACAGAAACCGGTTGTCTTAAATGCACGAAGAAACACATGAGCGAGCAGAGATAAGTCTGCTGGCCGGTATCTGACTCAGGTTTCACTCTGAGCACATCATTGGTTCTGGTGACATCCGTTACTTTGCCGCGCTGATGACATCTTATTTAAGCGCGCAGGCAGATGACAAGACGAGAAACCTTTACTATCAGGCTTGTCTCTTCCTGCATGGATGATCAATAAATCAGCAGCCTCACTGGCCGAACACAAGAAAGAAATAGACAATCCTCTCAAGACGAGCTATACTATAGCAATGTATGGGAAACCAGTTAAATTCAGGTGATGCCGACCGCCCGCTGTGTATCCTGACCTTTTCGCTGGAACCAGGATTCAGGAGCGGATGTGAAATATATCTGTACATATAAGGCAGCAAATTTgaaCCAGACGTTTTCTCACCATGAAGATGTCTAAGCAAGCAGCTAACCAGTGTTTTGAAGACCATTGGGAATGGGAGTCTGCGGTTACAGTGACAGCGTACAGAGTCCGAAacatgagacaaaaaaaaaaaaacccacatgaTCATAtggtgaaaaggaacaaaaaggGCAGGAAGAGagcaggagggctggagggctttcccaccgcagtcagtttgtcctgttagctcatcgtgtgcgtcggcggacttcagatgcagagaggaggagttgacaaaggcatccgggttcgagtccggggaagagcggttccagaaatcaggtaagacaaaaacagaacccaaaaaataaagtgaa
>TCONS_00061983
CACGTGGGCGCGCTGTTGTACTTTGCTCGTTCCCGCCAGCGCGCGACACCTCATTCTCCCAGTCTGGCTGTTTAGTGTGTAACACGCGCCCTCACACTTTCTGTCACACACTCCAACAACGTGAGTACAGAAACCGGTTGTCTTAAATGCACGAAGAAACACATGAGCGAGCAGAGATAAGTCTGCTGGCCGGTATCTGACTCAGGTTTCACTCTGAGCACATCATTGGTTCTGGTGACATCCGTTACTTTGCCGCGCTGATGACATCTTATTTAAGCGCGCAGGCAGATGACAAGACGAGAAACCTTTACTATCAGGCTTGTCTCTTCCTGCATGGATGATCAATAAATCAGCAGCCTCACTGGCCGAACACAAGAAAGAAATAGACAATCCTCTCAAGACGAGCTATACTATAGCAATGTATGGGAAACCAGTTAAATTCAGGTATTCACGGACGGGTGCGGACAACCGTGAGGACAATATGTCAGGACA
>TCONS_00061984
CACGTGGGCGCGCTGTTGTACTTTGCTCGTTCCCGCCAGCGCGCGACACCTCATTCTCCCAGTCTGGCTGTTTAGTGTGTAACACGCGCCCTCACACTTTCTGTCACACACTCCAACAACGTGAGTACAGAAACCGGTTGTCTTAAATGCACGAAGAAACACATGAGCGAGCAGAGATAAGTCTGCTGGCCGGTATCTGACTCAGGTTTCACTCTGAGCACATCATTGGTTCTGGTGACATCCGTTACTTTGCCGCGCTGATGACATCTTATTTAAGCGCGCAGGCAGATGACAAGACGAGAAACCTTTACTATCAGGCTTGTCTCTTCCTGCATGGATGATCAATAAATCAGCAGCCTCACTGGCCGAACACAAGAAAGAAATAGACAATCCTCTCAAGACGAGCTATACTATAGCAATGTATGGGAAACCAGTTAAATTCAGCCAGTGTCCCAGTTTCAGGACCACGGACAGCAGCCCTTGAATTCAGCGGTTTTCTGTTCAG
>TCONS_00061985
CACGTGGGCGCGCTGTTGTACTTTGCTCGTTCCCGCCAGCGCGCGACACCTCATTCTCCCAGTCTGGCTGTTTAGTGTGTAACACGCGCCCTCACACTTTCTGTCACACACTCCAACAACGTGAGTACAGAAACCGGTTGTCTTAAATGCACGAAGAAACACATGAGCGAGCAGAGATAAGTCTGCTGGCCGGTATCTGACTCAGGTTTCACTCTGAGCACATCATTGGTTCTGGTGACATCCGTTACTTTGCCGCGCTGATGACATCTTATTTAAGCGCGCAGGCAGATGACAAGACGAGAAACCTTTACTATCAGGCTTGTCTCTTCCTGCATGGATGATCAATAAATCAGCAGCCTCACTGGCCGAACACAAGAAAGAAATAGACAATCCTCTCAAGACGAGCTATACTATAGCAATGTATGGGAAACCAGTTAAATTCAGTGACCCACCACATCCCCCTCCCCTTCCATTCGaggtaaagagagagagaggttgaGGCAGAGAGGGATGGTTTCCCTGAAGGCTGGTTTATAAG
>TCONS_00061986
CACGTGGGCGCGCTGTTGTACTTTGCTCGTTCCCGCCAGCGCGCGACACCTCATTCTCCCAGTCTGGCTGTTTAGTGTGTAACACGCGCCCTCACACTTTCTGTCACACACTCCAACAACGTGAGTACAGAAACCGGTTGTCTTAAATGCACGAAGAAACACATGAGCGAGCAGAGATAAGTCTGCTGGCCGGTATCTGACTCAGGTTTCACTCTGAGCACATCATTGGTTCTGGTGACATCCGTTACTTTGCCGCGCTGATGACATCTTATTTAAGCGCGCAGGCAGATGACAAGACGAGAAACCTTTACTATCAGGCTTGTCTCTTCCTGCATGGATGATCAATAAATCAGCAGCCTCACTGGCCGAACACAAGAAAGAAATAGACAATCCTCTCAAGACGAGCTATACTATAGCAATGTATGGGAAACCAGTTAAATTCAGattATGCATCAAAAAACGAGGAAACCACACTTTGACCACA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00061982 False 911 lncRNA 0.48 5 21609358 21852227
TCONS_00061983 False 492 lncRNA 0.49 3 21756657 21852215
TCONS_00061984 False 505 lncRNA 0.49 3 21797940 21852215
TCONS_00061985 False 538 lncRNA 0.49 3 21812085 21852215
TCONS_00061986 True 484 lncRNA 0.48 3 21818946 21852215

Neighbor

gene id symbol gene type direction distance location
XLOC_030983 tenm1 coding downstream 85107 21295747 ~ 21524251 (-)
XLOC_030982 BX470224.4 coding downstream 316113 21293130 ~ 21293245 (-)
XLOC_030981 NA coding downstream 367274 21239333 ~ 21242084 (-)
XLOC_030980 si:dkey-13n15.2 coding downstream 544264 21059459 ~ 21065094 (-)
XLOC_030979 si:dkey-13n15.2 coding downstream 564665 21033771 ~ 21044693 (-)
XLOC_030986 smarca1 coding upstream 487 21852714 ~ 21888368 (-)
XLOC_030987 NA coding upstream 74595 21926822 ~ 21934278 (-)
XLOC_030988 arhgef9a coding upstream 87506 21939733 ~ 22001053 (-)
XLOC_030989 amer1 coding upstream 159348 22011575 ~ 22019061 (-)
XLOC_030990 asb12a coding upstream 168915 22021142 ~ 22027357 (-)
XLOC_030973 NA non-coding downstream 990019 20616071 ~ 20619339 (-)
XLOC_030972 NA non-coding downstream 994738 20600387 ~ 20614620 (-)
XLOC_030969 NA non-coding downstream 1188987 20416722 ~ 20420371 (-)
XLOC_030993 CR812469.1 non-coding upstream 235429 22087656 ~ 22096908 (-)
XLOC_030995 NA non-coding upstream 378463 22230690 ~ 22235158 (-)
XLOC_030997 BX546499.2 non-coding upstream 583559 22435786 ~ 22438595 (-)
XLOC_030998 NA non-coding upstream 601603 22453830 ~ 22455994 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G480884 NA non-coding CI01000339 null 930162 ~ 930412 (+)
rainbow trout (Oncorhynchus mykiss) G485539 NA non-coding NC_048570.1 CM023224.2 22120182 ~ 22120434 (+)