XLOC_030973


Basic Information

Item Value
gene id XLOC_030973
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 20616071 ~ 20619339 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00061980
GAAAGATTGGTTTTGTTCATATGAATCTAGATACATTCAtgattatattgatatatatttgtGAAATATAATGTTTAGTAGCATAAAAATTGGCTTTTATTTGGGAGGGTTTGCCTCCATTTTGCATCCTACAATTAGTAGTAGGCAGTTGAAGGCCTCATGTGACAGGAAGTAAATCAATTACTTTTTTTAGTTCTTAAAatttcttatttgtttgtttgtttgcatgtcaTCGAGACATTAAACATGGATAGCATGTAGAAAATTACTTAGAAAAGGAAAATGGCATTATAAACCTTGGCAACTATATTTGCCGGTGGGCTTATGTGACCTGAAACAAACCCCTCAAGGCAGTTTTTTTGGCTGGCATATGGATAGCATGGTTGCTTGGTTTTATACAGTAGATTGTCTCACTGTGACCAATATAACGTGCAGTCTGCAGCTCCGTATCGTAGACTATTTCGGCGCAATGCACTGCAAATCTAGTTAGTGAAGATGAACTGAAACAATCATATGGgtatatttagcaaaatgagtaaacatctttccagacacattcaagaagcatttttagagACAAAATATTTATTCTAGTACGACTTCTGCACTTTTACAAAATTTTGTTACAATCACTAAGGCTGTACAATTGTTACAGTTCTTCTCAACTGCTAAAACAATAAACCGTATTGTCCGAACCAAATGCTCAGTTGACTGAACCCACTGATTCCCACTGAATCAATTGGCAAAACCATGCGTACTTTTTACCTGTTTAGACTCAACTTGCCAACACATTTTCATTGTGATGTACCAGTGCTGCATAATGGTGAGCACAGGTGACAAAAGTCAAAGACATTTAATGCACAGGTGTCACCTCTTGAACATAACTCAAAACTGATCACACTTGTGGCTAATGATGTGAAGGAACccatacaGTAATCCAGTTCAGAGGGCACTAGTTTGTGAGGCCCTACCATAGATCGAAATCTAAAGAAAGCATTCGTGTGAGAGAAGGTTGAGGTGATCGCCAAGACAAAAAACAGTAATATCTGATGTGATGGACCATGTTCTTGTCCATGGTATAAGCATGAGGGAGACTGGACAAAGGGTACAACCAAACATCAGTAGATTCACTGTGTCCAGCAAAATGTAAAGATTTAGAGAAGAGAACAGGTAAAAACATTTTTGacattatagtaatttataatctAGTGTCTATAGTATATACACTATAGTATAGTATGTAAATGTTGACAGCAATTACTGTATGACATACTATAGAGCTGGTAAGTCTCTCAACACATGGGCAGTCAGATTTGTGGTCAAATatcaggcagatggtcaaaaggcaggcagcagacaacgtaaaTAAATGAAACCCTGTCAAAAACAAGGCAAGGCAAATCCATCGTAATGTTTACAAAACTgttcaacaagactcagcaactctgtgtgtgtgtgtgtgtgcgcgtgtgtgtgtgtgttctttaaaATCGTAGTAATAAGTTCatgagtggcttcagctgtgagtgtttgcaatcagacTAGATCTAGGCCAGGTGTATGAGTGGCGCATGACTGGATCTTTTAGTTCTTTTGCtcgcagatttgtagttcttcagTGATCTGCATAGGCTGAATTGCTAGTGATCGTGACAGATGTGGCATGCCAGTATTTTTCCACATAGTGTTTAGTGACTTTTCAGTAGTGTTTTTAATTTGGATTGACTTGGTGCACGATTTGACAACATAGTTCAGTTTTAAGCACAGATTGAACTGTTTTGAGGTGAAAGTTTGGTTTTGCAAGAAGAGTCTGAGGTTTTGTCAATGTAGCTTGAAAATTGGATTTTATGTTCACAGTTTAGAGAAATGAGAGCAACTTTCAAGAAATGTGTCTTAGCAATTAAGAAAAGCTGTAATGTACTGTGCCTTCTCTTTGTTGTTTGTGATTTAGAAGAGAGCAGCATTGAACTAGCACACATTTTCATCTTTAACTAATGGTGAACCAAACATGTCTAAATGGACATTTCTTTGGAAACTAGACAGAAATTACAATTATAatgctctgcaataacatttaTGCTATGTGCAGATCAGGTTGCAGTATaacacttaatttttttcatatattctaCTTTAATCACCACAGTTTTCTGAGATCTAGTTTTTTATGCACTTTGCACCCTTGTACCTTGTATTTAAAGGGTATCTCTTATTAATAATTTTGGTTAGATTTTGGCTGTAAGCCCTGATTGTGCATTTCTGACCTATCAGAGAAGACTAAACTCAAAGTTATGATCTttcttttaatgaataatatgagTTTCTAAGAAATTAGGTGGAATAGAtggaatgtatatatttttatacaggaGGGAAATCATTACAACCTTTAAAACACATTGAGGCATGTTTCAATTTGCATAATATGGAAACTTTATTATTGTAGAAGTCTTCAAAGTCTTAATAAAATggtattttttatacaatacctttagtttttttaaatcaaaacagTGTTTGCATTCATTAGAATGTTTACCTCTTTACATGTTAGCttagctgttattattattattattattattattatta

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00061980 True 2592 lncRNA 0.35 2 20616071 20619339

Neighbor

gene id symbol gene type direction distance location
XLOC_030972 NA coding downstream 1451 20600387 ~ 20614620 (-)
XLOC_030971 ficd coding downstream 124799 20485624 ~ 20491272 (-)
XLOC_030970 ISCU coding downstream 169989 20443888 ~ 20446082 (-)
XLOC_030969 NA coding downstream 195700 20416722 ~ 20420371 (-)
XLOC_030968 AL845326.1 coding downstream 207119 20408836 ~ 20408952 (-)
XLOC_030974 wscd2 coding upstream 7861 20627200 ~ 20678300 (-)
XLOC_030975 si:ch211-225b11.1 coding upstream 167433 20786772 ~ 20814588 (-)
XLOC_030976 pik3ip1 coding upstream 247233 20866572 ~ 20879527 (-)
XLOC_030977 si:ch211-225b11.4 coding upstream 266943 20886282 ~ 20921677 (-)
XLOC_030978 camk2b1 coding upstream 311913 20931252 ~ 21030996 (-)
XLOC_030967 NA non-coding downstream 318632 20289359 ~ 20297439 (-)
XLOC_030961 NA non-coding downstream 506806 20105008 ~ 20109265 (-)
XLOC_030981 NA non-coding upstream 619994 21239333 ~ 21242084 (-)
XLOC_030982 BX470224.4 non-coding upstream 673791 21293130 ~ 21293245 (-)
XLOC_030984 NA non-coding upstream 990019 21609358 ~ 21852227 (-)
XLOC_030985 CR848717.1 non-coding upstream 1117020 21736359 ~ 21737345 (-)
XLOC_030987 NA non-coding upstream 1307483 21926822 ~ 21934278 (-)

Expression


Co-expression Network