XLOC_030961


Basic Information

Item Value
gene id XLOC_030961
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 20105008 ~ 20109265 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00061975
GTGGAATCATTAAACTGGAAATGAGTGAGGATTACGTTCACTTCATATTTTACCCGATACGATACAAATTATTCAGAATCAAATTAAGTTACATCAAATATTTTGATACAATTTGTAAGACCTGTTATAACCTATTTGGTAGGCTACGTGTCGTGtaatatattatgcaaataataataaaaaatagctcTCGGGACTTTATTTTTAGGCATGTTTAGCGTTTAATCATTGTTAAATTGAAGAATAAATAATGAATCGCACTGATCTCCGATTATCCTCCTCGGAGACGTAATGTCATAAAAATGATGCTTCCTGCTTTGATTCCATATTCTTGCAACTTCTTGCCAGACTCCAGTTGTTTGGTGTTAAAAATTAGCCTCCACTGTTCAATGGGGACTCTCTCTTTGCGGTAGACTTTTTCCTGAAGTAACTTTCAGTTTCCATTCTCACCTGTTCAGTGCTAATCTACAAAGTAATCTTGTTCAGTGACGtcagtattttcattttataatcatttgttagacaaacattattaaaatgagGGAATTTACTGTGATGACTTGTTTTATAAAGGCAGAACAAATCCAACAAAAATGTCTGGTATtgctattattactgttatttaactTATAACGACtatatgataaatataataatttaagcaATATAGTAAACTcatcattaatatatttttaattatgaataCATTTCAGTtggtataaaaaatgtaaatatgcttTTCCTTTTAAATGTTTAGAACATTACCACACTACAAACAAGCACAGTACAACAgatgaaatattttgaaataaatatttattataatgcacACCAGAGCCAATGTTACGCTTACATCAAAATTCTGAGTCCTTAAGCATAGCAGATCTCTCTTCCCTCTTTGGTAGTGGGATGTTTCCTgcaattaaaaaacaatacaattttattattcatttagtattgaaaaataataataataataataataaaaataacacacaTCATCTGTTGAGCAAACATATGTAAACAACAGTGCATAAAAATTCGGCTAAATGTTAAAAGTTTCTAATAGAATGTGTCTTTCATCCCTGGCTTAATCAGTTAATTATACAAACCTTGGTTTTAAATGTTAGTATGGAgatacatttgttttaataaaactgcTTGGCCACTTTTTTACCTGGAGGTGCCAGAAAGTACTCCTCTACTGTGTGTTTGGCCAGCTGGAGCAGCTCCTCAGCACATTCACCCTCTGTTACTGTATCATCTCTCAGATACAGCTCTCTGTACACAGCCTGTCCTCTAGAACTGAATCCATTGGTTCCACACCGTCAGTGTTAATGACATGAAGCTGATCTGCAAATCGGATGGCTTTCTCCAGACAGTCCACTCCTTCCTCACTGCCGAAATCAACAAGTGCCAATCTCTCTAGCTTGTCCACTAAATCTGGTGAGATTCTTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00061975 True 1458 lncRNA 0.33 2 20105008 20109265

Neighbor

gene id symbol gene type direction distance location
XLOC_030960 slc6a4b coding downstream 116236 19969794 ~ 19988772 (-)
XLOC_030959 NA coding downstream 141452 19960680 ~ 19963556 (-)
XLOC_030958 git2a coding downstream 172387 19886055 ~ 19932621 (-)
XLOC_030957 gltpa coding downstream 243242 19850828 ~ 19861766 (-)
XLOC_030956 trpv4 coding downstream 271698 19795977 ~ 19833310 (-)
XLOC_030962 pxmp2 coding upstream 6509 20115774 ~ 20123002 (-)
XLOC_030963 usp30 coding upstream 16669 20125934 ~ 20135679 (-)
XLOC_030964 dao.2 coding upstream 61695 20170960 ~ 20185665 (-)
XLOC_030965 dao.1 coding upstream 79173 20188438 ~ 20195350 (-)
XLOC_030966 dao.3 coding upstream 87873 20197138 ~ 20205075 (-)
XLOC_030952 NA non-coding downstream 768481 19334206 ~ 19336527 (-)
XLOC_030951 NA non-coding downstream 789360 19312775 ~ 19315648 (-)
XLOC_030949 NA non-coding downstream 1096234 19008646 ~ 19008774 (-)
XLOC_030942 NA non-coding downstream 1320574 18783738 ~ 18784434 (-)
XLOC_030967 NA non-coding upstream 180094 20289359 ~ 20297439 (-)
XLOC_030968 AL845326.1 non-coding upstream 299571 20408836 ~ 20408952 (-)
XLOC_030969 NA non-coding upstream 307457 20416722 ~ 20420371 (-)
XLOC_030972 NA non-coding upstream 491122 20600387 ~ 20614620 (-)
XLOC_030973 NA non-coding upstream 506806 20616071 ~ 20619339 (-)

Expression


Co-expression Network