XLOC_030942


Basic Information

Item Value
gene id XLOC_030942
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 18783738 ~ 18784434 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00061971
TGGAACTGCCACAGGACAGAAGGTGAATGGGCCGCTCTTCATTGAAATTCATCGGTGTGTGTACTGAGCATGCTCAGTTGGACTTGTCCCCGCATGCCTCATCACACCGCAAGATTTTAGCCAGACTGATGAGCAATGTTCGTCACCACAACGACCAAAACAACGTCTCGCTCTGTGGGACGCTTTCTCTGGGGTAATCTACTGGCAAGTGAGATGTTTGCTTGAATCACGCTTCATTGACACTCCCCACTAACAGCAGAAGCATGGGAACTTGACACTGAAGGGACAAAGCGGTGAAGTGGTATTTGGAGACTCACAGACTATGATAAAAGTATTTATCACATGGCCAATCGTGtgattggtcaatcacaacattccaagg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00061971 True 382 lncRNA 0.48 3 18783738 18784434

Neighbor

gene id symbol gene type direction distance location
XLOC_030941 TMEM132C coding downstream 269788 18431401 ~ 18513950 (-)
XLOC_030940 NA coding downstream 359101 18317903 ~ 18424637 (-)
XLOC_030939 NA coding downstream 494162 18288810 ~ 18289576 (-)
XLOC_030938 rnf215 coding downstream 737685 18040054 ~ 18046053 (-)
XLOC_030937 zdhhc8b coding downstream 776661 17881074 ~ 18007077 (-)
XLOC_030943 aacs coding upstream 42880 18827314 ~ 18897482 (-)
XLOC_030944 bri3bp coding upstream 120534 18904968 ~ 18911114 (-)
XLOC_030945 poli coding upstream 128516 18912950 ~ 18924834 (-)
XLOC_030946 ankle2 coding upstream 158609 18943043 ~ 18962794 (-)
XLOC_030947 golga3 coding upstream 181060 18965494 ~ 19006290 (-)
XLOC_030934 CR759970.1 non-coding downstream 1742450 17040621 ~ 17041288 (-)
XLOC_030933 CR392021.1 non-coding downstream 1884691 16898923 ~ 16899047 (-)
XLOC_030930 CR450719.1 non-coding downstream 2338273 16445349 ~ 16445465 (-)
XLOC_030949 NA non-coding upstream 224212 19008646 ~ 19008774 (-)
XLOC_030951 NA non-coding upstream 528341 19312775 ~ 19315648 (-)
XLOC_030952 NA non-coding upstream 549772 19334206 ~ 19336527 (-)
XLOC_030959 NA non-coding upstream 1176246 19960680 ~ 19963556 (-)
XLOC_030961 NA non-coding upstream 1320574 20105008 ~ 20109265 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location