XLOC_030944 (bri3bp)


Basic Information

Item Value
gene id XLOC_030944
gene name bri3bp
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 18904968 ~ 18911114 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060152
TTCCGGCATATCACACCgctatattcagttttttttatcagCTACATCAGACCCGCCATCCAGCATTTCCTCCACTGCACATTGCCGGTTGCCAGTTCTTCTCTGAGGATGAAAGGAGCTAAATTAGCGGTGGTTTTGAGCCTGTTTTTGGCGCTCGTCCTCCTTACTGGGGCAGCGCGGAGCAGGAAAGACTCGAGCACCCAGAACAGCTTCAGGAGGGCGGCCAGCGGCTTCTACCAGACCCTCAGCAATGTCTTCGGGGAGGAGAACATCAGGGCCCTCTACAAGTTCTTCTCAAAAACTACCGAGAGGTTTGTTCATGGAGTCGATTCATTATTGGACACTTTGTGGAAACTGTGGGTGGATCTGCTGGACGTTATGGGCATTGACTCCTCTAACCTGACGCACTACTTCAGCCCATCATCCGTGTCCAGCTCTCCCGCTCGGGCTCTTCTTCTAGTGGCAGCCCTCCTGGTGGCCTACTGGTTCCTTTCCCTGTTCCTGAGCGGCTTCTTTTACATCCTCCACGCAGTGTTCGGCCGATTCTTCTGGCTGGCCCGCGTCACCCTTTTCGCCCTCTCCTGCCTGTACATTCTGCAGAAATTCGAGGGCGATCCAGAAAAGGCAGTGCTGCCGCTGTGCTTCATCATGGCCGTGTATTTCATGACGGGGCCGGTCGGAGCGTACtggaggaaaggaggaggatcTGGAACTCTGGAGGAGAAGATCGACCAGCTCGACACCCAGATCCGCCTCCTCAACATCCGCCTGAGCAGAGTGATTGAAACCCTAGAGCGCTCCAGCGACCAATGAAGAGATCTTCACCAAAGGCTCAGAGCTGGGGTTTGTGGCTTGAGTtgagaagaaacaaacaaaaaaatgttgtttttgttatttctttCCACCGAATTTTTCTCAGGATGTCCCCCCTGACGAGAATCGTACGTGACGTGTGGAAATTTGATTCATTCTCCATTAGAGGATTGATTTTATTCGCCCTGTTGTCGTAGAGTGTATTACTAGTGTCCACTTCTACTGTAGCCGcccatttctttttaattttgagTAAATATCAGGACTTTTTTGTA

Function

symbol description
bri3bp Predicted to be located in membrane and mitochondrion. Predicted to be integral component of membrane. Orthologous to human BRI3BP (BRI3 binding protein).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005739 mitochondrion cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5254 Predicted to be located in membrane and mitochondrion. Predicted to be integral component of membrane. Orthologous to human BRI3BP (BRI3 binding protein).

Ensembl:

ensembl_id ENSDARG00000010108

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060152 True 1088 mRNA 0.51 3 18904968 18911114

Neighbor

gene id symbol gene type direction distance location
XLOC_030943 aacs coding downstream 7486 18827314 ~ 18897482 (-)
XLOC_030942 NA coding downstream 120534 18783738 ~ 18784434 (-)
XLOC_030941 TMEM132C coding downstream 391018 18431401 ~ 18513950 (-)
XLOC_030940 NA coding downstream 480331 18317903 ~ 18424637 (-)
XLOC_030939 NA coding downstream 615392 18288810 ~ 18289576 (-)
XLOC_030945 poli coding upstream 1836 18912950 ~ 18924834 (-)
XLOC_030946 ankle2 coding upstream 31929 18943043 ~ 18962794 (-)
XLOC_030947 golga3 coding upstream 54380 18965494 ~ 19006290 (-)
XLOC_030948 ranbp1 coding upstream 95587 19006701 ~ 19014589 (-)
XLOC_030949 NA coding upstream 97532 19008646 ~ 19008774 (-)
XLOC_030934 CR759970.1 non-coding downstream 1863680 17040621 ~ 17041288 (-)
XLOC_030933 CR392021.1 non-coding downstream 2005921 16898923 ~ 16899047 (-)
XLOC_030951 NA non-coding upstream 401661 19312775 ~ 19315648 (-)
XLOC_030952 NA non-coding upstream 423092 19334206 ~ 19336527 (-)
XLOC_030959 NA non-coding upstream 1049566 19960680 ~ 19963556 (-)
XLOC_030961 NA non-coding upstream 1193894 20105008 ~ 20109265 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000071_01443137_01445109 BRI3BP coding CI01000071 null 1443137 ~ 1445166 (+)