XLOC_030948 (ranbp1)


Basic Information

Item Value
gene id XLOC_030948
gene name ranbp1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 19006701 ~ 19014589 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060158
GCGCGAAAGTAGCGAAGTGAAATCTCACGAGCTCGCACTGATCAAAACCAACAGATACTCTCTCTAATCGAAAAACATCTGCAAAAACCATGGCGGACACAAAGGAGGCACAAGATGAGCATGAACCATCCACTGAGAACGTTGAGGAATCCAACCATGACCCTCATTTTGAGCCCATCGTCTCACTACCCGAGCAGGACGTTAAGACCTTAGAAGAGGATGAGGAGGAGCTTTTCAAGATGAGGGCAAAGTTGTATCGTTTTGCCAGTGAGAACGACCCTCCTGAGTGGAAGGAGCGCGGGACAGGTGATGTCAAACTTCTGCGACACAAAGAAAAGGGCTCCATCCGCCTTCTCATGAGGAGAGATCGTACCCTCAAAATCTGTGCCAACCACCACATTATGCCGCTGATGGAGCTGAAGCCCAATGCAGGCAGTGACAGGGCCTGGGTGTGGAATACACATGCCGACTTTGCAGATGAAAAACCCAAAGCAGAGATGCTGGCTATTCGATTCCTTAATGCAGAAAATGCACAGAAGTTCAAGATGAAGTTTGATGAATGCAAAGAGGAGGTCAGGAAGTTTCTTGAAGgaAGCATGAACAGCGCTAACAAAGTGGCAGAGAAGCTGGAGGAGTTGTCTGTGAACGATGACAAAACAAAGAGTTCAGAGGACAAGAAAGAAGAGGCGAAGAAAGAGGAGAAGGCTGTTGAGGAGAAGAAATGAGCCCAGGAACGTCGCTTCATATGGATCCTCCACTTGCCATTTTCCCCTTTTCTACAACAGACTCTGAAAATGAAAAAttggacacttttttttttttttttttcctttttggccTCTTGACTTCACAAGACCTTGGTGCCACTCTTAAATGCGTCCATTTCTCAAACTTCAAGATGTTGTGAGCTTTTGTCCCATTCACGAACTCCCATATCGCCCTTCATTTTCTCATACATTGTGGACCAGTCGTCAGTCAtcatgtatttgtgtatttacacgACATGCAATGATACAAGGCTTGTGCTATTGATTGATTCCCACATTGGGTAAcctcttttgttgttttttctttcttttgtactTTACTTTAAAGAGTTATATTGCGAGTGTCTAGATGAGCACTGTCTGATATGAAAGCGGGCTGTATGAGAGTTGATAGGGAGTATGAGTATCTGAGATCTTTGACTTTTCCTTACAATAAAGTCACACGAGGAATATTTGACTTCTCTGTGGCTTGAATTCACGCTTGAGTAGCATAATTTTTTTGGCGGattgaaagaaaataaaatgttagggatgctccgatcgatcagttggagatcggtatcggccgataatcacattttataacTTAATCAGTACTTACCGATCACAGGTGTTTGTTCTCGGGTTTCCTCGCAGAGATAGATGCACATGCACTCAACAGCGCTACAACACCTGAGGAGGTAAATGATGTGTGAGGGATGAGAGTGATCATGGCGATCCCAACACAGCAGCTAAAATACATACAGATGTGGTGCGGCCTTTGTTTATAGTTTGTTGGCGTGCCTTAGGCGAGTGATGGTGTCTGAGTCTCTTGCAGCCAATGCAtatccagtgttttgagctgctgtgatgCAAGTAAAGCAGTCTCCCCTATGGTGTCATCCAACCATGTAAGCTCCACTATATACAACAGCTTCATGACACCCACAATTAGGTAAAATGCCCCAAAATCATGGAGCTGAGATGACAATTAAAAAAGGAATCTATTATTTTCTGCAAAGCTCATTCTGACCAagacatgtccacactaaatgctTATAAGACGcatgtttaagggattatatacAGCATCTTTCATTTATTCTCCAAGGTAAGAGATTTGCACTGAAGTATCATATTGGTCACCATGTACTTTGTGTTGGCTGCAAAAGtcctgattggagcatccctaatGAAATGTGCTCCATCGTGATTAACTGATGGAAGTCTATGACAAAGATAGACTTGATATGTACAACAAAGATATGTAAAACAAAGATATAAAGAATGGTTGACAATTCTCTCTGGTGTGGAAATGCCGGAGGGTTTAAAGTGGGATGCTTTTTAAGAACAGAAAGATAAGTGAATATATTAGGTACTGTATCactaattaaatgcaattttcaTTCCATAAAGTTTGTCGGAACTTAAATATGAAGACTGCATGTATGATCATTTGGGCTTTTAGtcactgtttttcttttattttgaatgtaaaaaaatttagAGGATGCTGTTTTGAAATTGTGTGATGATGATGAACAGCAAATTTTCCACATTCCCAGTTTTGAGTGGTTTTGATAAAAAAACAGGGTCGTTTAAATTGCATTTGGCGTATGATGAGTGAATTAATCTCACATTTTATAGTGCTAACTAATACATCATGTAAAAGGGTTGAGATCAAACCAAATTAAAGACTGGTGCTTTTA
>TCONS_00060160
GGGCTGCGAAACTACGAGTCGAGCACTTAAACGCCTTTAGGCCGCTTATTAGCAGCTTCTAGCTTGGATGCTAACTTAACTGACTGACCACTTTTGAAAACTCGTTTAACTCCCACATTAATTCATACACATCTGATATCCGGTCTTCAGTCAAGTCAGTCGTTTAGCTAAGTAAGCTGCTCAGCTCTGAAAATGCGAAGTGATCAACTTGGGAGCGGTTCAGAGCATCACATCATGTGCAGAAGATCTGCCAGAGTTGATCAGAAAGCTTTTCAATAATTAAAGCTTACAAGGCCTTCATGAATGTGAGACCAGTGATTAGTGAAGAGCAAGTGCATTGATTCCGCCAGCATCACAGCATGCGAGTTCAAGCACCAGTGGATGCAAGTTTGGTTGCAGCAGCAAATTTGGAGACAATAGGCCAAACTCCAGAGAATGATCCCTCCAAATCCCGCAGCCTTTCACTCCACTGATCTGATGAGTAATGTGGAAGCAGGATCCCCACAGAAGGGATCAGGACTTGTGAGCCTCAGcagaacaaatactgtagtaaatGAGGCACAAGATGAGCATGAACCATCCACTGAGAACGTTGAGGAATCCAACCATGACCCTCATTTTGAGCCCATCGTCTCACTACCCGAGCAGGACGTTAAGACCTTAGAAGAGGATGAGGAGGAGCTTTTCAAGATGAGGGCAAAGTTGTATCGTTTTGCCAGTGAGAACGACCCTCCTGAGTGGAAGGAGCGCGGGACAGGTGATGTCAAACTTCTGCGACACAAAGAAAAGGGCTCCATCCGCCTTCTCATGAGGAGAGATCGTACCCTCAAAATCTGTGCCAACCACCACATTATGCCGCTGATGGAGCTGAAGCCCAATGCAGGCAGTGACAGGGCCTGGGTGTGGAATACACATGCCGACTTTGCAGATGAAAAACCCAAAGCAGAGATGCTGGCTATTCGATTCCTTAATGCAGAAA

Function

symbol description
ranbp1 Predicted to contribute to GTPase activator activity. Predicted to be involved in positive regulation of mitotic centrosome separation. Predicted to act upstream of or within intracellular transport. Predicted to be part of nuclear pore. Predicted to be active in centrosome and cytoplasm. Orthologous to human RANBP1 (RAN binding protein 1).

GO:

id name namespace
GO:0046604 positive regulation of mitotic centrosome separation biological_process
GO:0046907 intracellular transport biological_process
GO:0005813 centrosome cellular_component
GO:0005634 nucleus cellular_component
GO:0005643 nuclear pore cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG:

id description
ko05203 Viral carcinogenesis
ko05166 Human T-cell leukemia virus 1 infection

ZFIN:

id description
ZDB-GENE-040426-2548 Predicted to contribute to GTPase activator activity. Predicted to be involved in positive regulation of mitotic centrosome separation. Predicted to act upstream of or within intracellular transport. Predicted to be part of nuclear pore. Predicted to be active in centrosome and cytoplasm. Orthologous to human RANBP1 (RAN binding protein 1).

Ensembl:

ensembl_id ENSDARG00000014817

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060158 False 2455 mRNA 0.41 6 19006701 19014589
TCONS_00060160 True 979 processed_transcript 0.47 4 19010429 19013934

Neighbor

gene id symbol gene type direction distance location
XLOC_030947 golga3 coding downstream 411 18965494 ~ 19006290 (-)
XLOC_030946 ankle2 coding downstream 43907 18943043 ~ 18962794 (-)
XLOC_030945 poli coding downstream 81867 18912950 ~ 18924834 (-)
XLOC_030944 bri3bp coding downstream 95587 18904968 ~ 18911114 (-)
XLOC_030943 aacs coding downstream 109219 18827314 ~ 18897482 (-)
XLOC_030950 fam214b coding upstream 7197 19021786 ~ 19052497 (-)
XLOC_030951 NA coding upstream 298186 19312775 ~ 19315648 (-)
XLOC_030952 NA coding upstream 319617 19334206 ~ 19336527 (-)
XLOC_030953 foxn4 coding upstream 370914 19385503 ~ 19400166 (-)
XLOC_030954 kctd10 coding upstream 421894 19436483 ~ 19444949 (-)
XLOC_030942 NA non-coding downstream 222267 18783738 ~ 18784434 (-)
XLOC_030940 NA non-coding downstream 582064 18317903 ~ 18424637 (-)
XLOC_030939 NA non-coding downstream 717125 18288810 ~ 18289576 (-)
XLOC_030934 CR759970.1 non-coding downstream 1965413 17040621 ~ 17041288 (-)
XLOC_030933 CR392021.1 non-coding downstream 2107654 16898923 ~ 16899047 (-)
XLOC_030959 NA non-coding upstream 946091 19960680 ~ 19963556 (-)
XLOC_030961 NA non-coding upstream 1090419 20105008 ~ 20109265 (-)
XLOC_030967 NA non-coding upstream 1274770 20289359 ~ 20297439 (-)

Expression


Co-expression Network