XLOC_030967


Basic Information

Item Value
gene id XLOC_030967
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 20289359 ~ 20297439 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00061976
CTTCTGTAATGTAAAGCTTTATTACATAGTTCTGCCTCATGGAAAAACCTTCCCATCTTACAAAAAGTCTTTCCCATGTATACAAAAAATGCAttgttatttaagttttatttttttacaagcaTACATCTGAACTTAGTGTAATATATTTGTCTGGTTTAAAATGATAACGCAACACATTAAATGTTATAAACAGTAAAAGCATTTACACTTTCTGTGTCCAGAGATGTTAGCAGAGCACATCCAAGCACTATTTGTTTGCGGATACCTTCACATATACCCAAAGTAAAGACATTCATATATTTtcaaatgactttttaaatattttgcatcaCTAAATGTCTGTATAGTAGTTATgaaatccaaaataaaaacacGCGTCTCTGCTCTCCAGTCATAAATAAGAAACAAATCCACTATCATAACTTTCCTTTCTGCACAAAAGCTGCATTTCATCCCTGAATGAAGTGTGCCGAGCGATCATGTGCACTTATTCTGGGAAGACTTGATAGATTAATCACCCTGTCTTTCCTCAAAGCCTGCAGTAAAACCActgacgtcacacacacacacacactcacggagATCCAGTCAGAAGTTGCATAAGCACAACCAGGCCAAAATACACAGCACAGATGGCACACTATCATGACATAATAACATACTAGAGTCAAAAAAAAGCAACAGATGCAAGCACTTCACCTGTAAAAAGACAAGAAAACCGTCCAAGCCgaatgaaaaaaaagtttattctcataataaacacatacagtacatcatCTCAACAAAATGTACAAAGTGCAATATGCGTTGAAACTACAGCAAATCTGCAGTACACAAAAACAATTACTGCATACTTAATAGCGACGACAACGGTGACAAGATGTTTTTGCAATTAAACCGCATTGCTAATTCGCAAAAAGACCCTCGATATCCACCTACAGGAAAGTCTAAGGATGTTTTGGGAGCAGGAAAACCAGTGTCacattctgaaataaaaaaacaaaagccactTCTCACCAGTCTCCAGTTCTCCCAAGCAAACAGCTTACATCTATGGCAGCTCCACAAGCAACAGCATCAACAGGTAATGTggcctttatttattaattattgatttaatGCTAAGCTTTGGTTATCACTTCATACAGTGTATTGCTGAGTGTAGAGGTGGAGATGGTCTGTATATGATGAGCCTGCTCATGTTTTTTACATAAAAGCAAACACTCTGACAGGGTCTCCTGTTCATAAATAGTTCACAGTTATGGTGTAACCGCTGTACAAGGCACCACTCACTCGCAAACTTCACATTCGTGTTGCTCCAACTCAGCGTGAGAGCATATATGCGTGTATAAAATGGCGTTTATAAAACATTGGTAAAGTATGCTGCATAATATTAAACGTCAAGTACTTCAACTCAAGCTGTAATTGGCCAGCTGATGGTAAATAAAGGCATGTTGACACCAGAACATGATCAAAGATATAACAGTTGGACTGATGCATTAACAAAGCTTTTTGCTTCTTATCAAAGGTTCTGTGATCATGTCATCTGGTCAAGTTTCCACGGACACACACAGAGATGAATCTCACTGTCAAAAACATGTCTAGGAGGTTTTTTCACTCTTAAATATCACATAAAATGTATCAaatcaaatattatattttgCCTAAATGCTTCAAATTGATCCAATGTTTTTAATTCCTACttcttaatgaaaaataaaaaaaaaaaatcacaaaaaaataataattttatgaatTTATGATCATTTCCGGTTACTaccgtacactgtaaaaaaatggctgtgatttcaatggtaaagaactgtaaaaatgctactgtcaaaatctgtaacctggtcaacagtatgtttccttaatatatacggcaaataaccgtaaattgactttcctaGAATTCCCTgtatggcacataactttttatgcattttgttgacattactatggatctttttagttgtttccccatcagttatgtacaatagaggtttatattacatttaatgttgataaacaatgtttattgcatgacttttaattttatgtgtgttaccatactggtgtttagtagctgtgtgaatgactcTAAGCACCttctatatattaatttaattttctgCTTGTGgtaaaagttgattgtgatgtggtttggttcattatgtaacttccttaTAACCACCTGCATATGGGTGTGCTTATGTGTCTAATTGTGTAACAAAAGATAtgtagatgttggtcattcaaaatacagacatattacctctataaatgaATGAACTACGGTAGTTTACCGTGAAAATGAGAAATTATTTTTTACGGTTTGACCGTGTTTTTAACCTTAAAGTACtgtcaaccacagctgccgtttttttaaccgtaaattttacggatttattttttacagtgtatattacaACGAGAAaatatacaaatgcacacacatcactttaaatgggtgCGCAGCCAAACAGCAAACAGTGCAAATATATGTATtcaaaaaggcggcaacaccaaagctccaaaaataccaatttattcaattaaaaagacTGATACAAGGCGTGTAACATTTCAAGCACACCGCCTCTCACTAGCTacgttttcatccacctatttttatgtgcattttggagatGCGCATTAAAAAACGGTTGATTGAAACACTGAGATGCGCATACATTTGGAAAAAGCGCATAAGAACATATGTGCAacactgagtaggataaactttttatccgatAAGAAATGATGAGAAAAAactgtgatggaaacacttttaccgaacaaattccagtatacgCATTAAAAAAAGCCATGTGATTTTGTTACAAGAGATCAAGTGACGATAAATATGTGTGtgatggacaaaccagcaggctgagcgcattgtaaaacatctgaaatgttgttttagtcatcgCAAAACGCCTTACTGTTTAAGTGTTAgcgttattatattattagtaacCTCCAGAACTGTCTGTACTTCGTGTCTcgtgccttcaaacgccaccacatgTTCAGTGCAtgtcggcattgtcttctgaggtgaaagtaatttattaaataaggaaaagattcacacagtttctcctaccgcagcaaattcagtttttcctGTCGATATTtgccgccagttaatcaggaattacgtttaatgtgatatttaatgtgataatccagttttgtgcataaagtttattcgcatttttagatgaaaacatagctactgtccAATGAAGAGCTGGTGTGCTCAAAATGTTACACGTTCTGTATCAGccttttaattgaataaattggcatttttggagctttggtgttgccgccatTATGATGAATATATACTGttattatattacaaaacaatatattatttatttaataaaatcttgCATGCGCCAATCTAAACCTcccttttttactgtatttttcagtACATTGCACTGAATTTATAAGATTTATAAGAGTAAGGGCGTGTGTCCACCAAAGCATTTTTTCAGCTGCAGGAATGTAAACGCTGTTCTGAAAATGCTGAGCTGCAAGCACTTCTCGAAAGCTGTCGAAGCTTTTAAACAATGCAAACTCCATGCCTCGCTACGCTGccatcacttaaaaaaaaaactttcaataacttctaatgaaaacaacagaaaaagaaCAGCACATACGTTTCTGTGCACTTTGGTGAACAGGAGCCctcatgggaaaaaaaaaacaatattccaGTAAAACTCTGttggcaccaatagcctagtgcagtggttctcaaactctgTTCTGGCGGTCCGATGTCCTAAAGAtttttcctcaacacacctgcaaggatgtttctataaatcctagtaagagcttgattagctagcccaggcgTGTCTAACTgtggttggagctgaaatctgcaggacaccagacctccaggaccaaaaaaaatcagttcctaaatacaaaacattatttatcataTTTCATAAAACTTCCTTGTGGTTTTTGGGAAAATGTGACCTAGACATGCTCTTGTGAGATTCACTCATGCAGATACACACACTCATAGTGCAAACCATGCCACAACTTTACCTTGTAAGTGTTGTTCAATCTTTTGATGTAGATTTAATCCAAAAGGCCATTCCACCttgctttaatttctttatgAAAAACTTAATGCAAATGCAATAATGTGATGGAAATCATCAGCGAACTGCAATCAGCCTCAGCTCAGTTTGGCCCAAACAAGCCACTGCATCAGAATCAAGTGTAATGAGTCTTAAAAATAACAGTCGCGTTTTACCTTGGTGAATGACTGATTTGTATCGCATTTGGAGACACAGTACAGCTCTTTTGCTAGAGAAAAAATCCAATGTTAGAGCTCCTGTCGATATAAAATCTCTTGAAAACACACATATGTGCTACTAGAGACTGTAACAGTAACAATGACCCAAGCATTTCCCACTCTTTCACTATTCGAACAGCAACATGGACAGTTACATTCGTAAGAACAGCAACTGCATTTATGAGCATTTCATTGGAAACGGAGCAGCTTGAAGTTGCCTTCGCTTTTCTTTATTCTTCAAAATGATTGTCTTTCATCACCGTCACTAAGTACTAGAAAGATGGAAGAATCCCAAACAAATCTCCTCTTGGTGGTCCGGCACCAGCTTTCCCAATGAGCCTCCACACACCAAAGTGCTGCCAGTCTTCCTGTTTTGATTTCTGCCTGGCCTAACAAACAGTAATGAACTGATATGAGGTATCTGTTTGAAACCTGTGAGTGAATCATCAGTGCTCAATGAATGATAAGAGTCCATCAGCACACAAAGAACTTTCCTAATCGTGATAAAGAGTCCATTTCCTTTCGCCGTCCAGCCAGGAAGTGAGAGCGCAGGAGGgtgaatgattttaaaatgtgTGACCATGTCCAAAGGAATCTGTGACTCATAGCAGGCCACAACTAAGCGATTTATGCTGCGATAAATGGGTGGACTGATGGAAACATTACACAATGGTCTATTTTGATGTGTTCAAGTAATGGTCTCTGGGATGGCGAGTGTTTGAGAACAGCAGTGAGGAAGAGCAGGGAAAACCTCATGAACCGTTCATCAGTCAGTGCAATACACATCCATTTGGGTTTCATGCATTGAAAGTCTGTCCGATAGATTTTGGAAACCTATTCATTGAATgcacaaaaacagaaaacactCTTAATCCAACTTGCAAGATCTGTTCACCACAACACCAAAGTTCCCAAGTGGCTGAAATGATTAAAAAgtatctataaatataaatatctcaGTAACGTGTTGCAGAACTCCAGATGAAGCTGAAAATAAAAGTAGTGTTGCGTTAAAATCTCCTGCTGTCAGCTCTTGGACTCTTCACATCCTGCTTCGCCTTGGCTGAAGACCTCCATGTTGTCTGGTTTTGCCCATTCTGGGCTGAGCGAGTGCTCGGGTTCTGGGGACAATGAGAGCATGAGAAGGGTCCCTGCGTCAGAGGAGCAGGCCGAGCACAAGTCCTCAGATGAAAAGGTGAGACTGCCTAGTTTGGCGAGAGAGTTAGAGCGCTTGAGTCGTGAAGGAACAGTCAGTCCCGCTAATCGCATTCGTGCTTCAATTTCTTGTGTACGCTGACGCACAAGGCCTGGTTTGCCTCGGACACTGCGAAGACTGTCACTGCTGGAGCTGCGGGTGAGCGTAGAGCCGTGTGGAGATGAGACTGGAGTCAATCCTCCTGATCCGAGGACTGCCAACAAAGCCTCATTGGTCAGTGGCACTGCCGATTCAGTTCCAAAATCATTCCGTGTTCCAAAAGACCTGTGAAAGGGGTCAGCTGGATCACTGGAACTGTTCATTGCATCTTCTGTTTTACTAGAACCAGCTTCCCGTTGTTCATTTGCGCGTGCACGCTCCTGGAAGAGACCGGAGAGTTTTTCCAATCGTTCTTTTCGACGTCGAACTAAACCGGAGCGTTGGAGCTGAATCAGAGCCTCTTGTTGTTGAGGAGAACAAGACGCCTCTGCCTTCTCTAAACCTTTCAGCTCTCTCTCATTCCGGGGAAGAGCAGAGGAACCCTGTAGATCAGTCTCTTCCTGCCTGAAATCTCCTTCTCCTTTGGCCTCAGGCAGAGTTGTCTGGGTTTCAGTTTCCTGGTCAAGAGATTTGCTTTCTGGCATATCGTTATTCCCTAAGGACATTGCATTGGCATCAAGGCACGGATCTGAGACAGTTCTGCCACACTTGGCTGTCATGGACAAGTTGGCACAGGATAGCATCTGAATGGAGATACAGGGCGCACTGTTGAGGGGTAAAGGGGCAAGGCCTCGTCTGTTAGCCTCCGAAAGAGCACTTTGGATGGGCTTGGAAGCAAGCGATGAACCAGGAGCAAGCCTTGTCTTTACTTGGGCACTTTCCTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00061976 True 6427 lncRNA 0.39 2 20289359 20297439

Neighbor

gene id symbol gene type direction distance location
XLOC_030966 dao.3 coding downstream 84284 20197138 ~ 20205075 (-)
XLOC_030965 dao.1 coding downstream 94009 20188438 ~ 20195350 (-)
XLOC_030964 dao.2 coding downstream 103694 20170960 ~ 20185665 (-)
XLOC_030963 usp30 coding downstream 153680 20125934 ~ 20135679 (-)
XLOC_030962 pxmp2 coding downstream 166357 20115774 ~ 20123002 (-)
XLOC_030968 AL845326.1 coding upstream 111397 20408836 ~ 20408952 (-)
XLOC_030969 NA coding upstream 119283 20416722 ~ 20420371 (-)
XLOC_030970 ISCU coding upstream 146449 20443888 ~ 20446082 (-)
XLOC_030971 ficd coding upstream 188185 20485624 ~ 20491272 (-)
XLOC_030972 NA coding upstream 302948 20600387 ~ 20614620 (-)
XLOC_030961 NA non-coding downstream 180094 20105008 ~ 20109265 (-)
XLOC_030959 NA non-coding downstream 325803 19960680 ~ 19963556 (-)
XLOC_030952 NA non-coding downstream 952832 19334206 ~ 19336527 (-)
XLOC_030951 NA non-coding downstream 973711 19312775 ~ 19315648 (-)
XLOC_030949 NA non-coding downstream 1280585 19008646 ~ 19008774 (-)
XLOC_030973 NA non-coding upstream 318632 20616071 ~ 20619339 (-)
XLOC_030981 NA non-coding upstream 941894 21239333 ~ 21242084 (-)

Expression


Co-expression Network