XLOC_030974 (wscd2)


Basic Information

Item Value
gene id XLOC_030974
gene name wscd2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 20627200 ~ 20678300 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060192
ATGGCCAGATCTCTGCTGAAGATCCACCGCTATTTTCGGCGTAAACCGGTGCGCTTTTTCTCCTTCATCCTGCTCTACCTCACTGCCGGCAGCCTTGTTTTTCTCCACTCCGGCTTCTCCAGCGATTCTTCTACCGCCGGCATCGCTGGAAGCGGCAGCGACCCACTTCTGTCTGAGGGTAGAGGAGGTACAGGTGGTGGGAGCGCCACGTCTGAGGGTCTGGGGCTCTTAGGTCGGGTGTTTAAAGAGACACGGAGAACCCCCCGGAGATTCGGACCACCGTGGATGAAGGAGAGTAGGGGGCAGGATGCACCCGAGTGGGCCGGACGAGGATTTGATCACACCAGCAGCTGGAGCCATGGAGCCAAAGGACGAACCACCAAAGAGATGGATGATGGGAGAGCCAAGTACATCGGCTGCTATGTAGACGACACACAGAAGCGAGCACTCAGAGGAGTGTCCTTCCTGGACTACAAGAAAATGACTGTCTTCCGCTGCCAGGACAACTGCGCTGAGAGgggTTATCTTTATGCTGGTCTCGAGTTTGGAGCCGAGTGCTACTGTGGCCATAAGATCCAGGCTCCCAATGTCTCAGAGAGTGAATGCAATATGGAATGTAAAGGGGAAAAGAGTAACCTTTGCGGTGGTCCTAATCGACTGTCCATATATAGACTGGAACTGAGCCAGGAGTCAGCCCGCCGATatgGAAGTGCCATCTTCAAGGGATGTTTCAGAAGGCCAGACAATGTGACGCTGGCTCTACCTGCCAGTGCTGTAATGCAAAACATGTCCGTGGACAAGTGTGTTGACATGTGCACAGAGAAAGAATTCTCTTTGGCTGCTTTGGCTGGTGATAAATGTCACTGTGGGTTTCCAACTCCACTGTTCAACCTTCACGAGCATGAAGACGAGGAGCTGTGTCTTCACCGATGCACAGGAGAAGACTTTGAGAGCTGCGGAAACAGAGACTTCTTTGTAGTTTATCAGACACAAGTGCAAGATAACCGATGTATGGATCGGCGCTTTTTACCTACTCGTTCCAAGCACCTAATGGCACTAGCTAGTTTTCCCGGAGCGGGCAACACCTGGGCCCGTCACCTTATTGAGCTGGCCACGGGTTACTACACCGGCAGTTACTATTTTGATGGCTCACTCTACAACAAAGGTTTCAAAGGGGAGCGAGATCACTGGCGCAGTGGCAGGACTATATGCATCAAAACCCATGAGAGCGGCAAGAAGGAGATTGAGACTTTTGATGCCAGCATCCTCATGATCCGCAACCCTTATAAAGCCCTCATGGCGGAATTTAACAGAAAGTATGGCGGCCATATTGGATTTGCCTCACAAGCTCACTGGAGGGGAAAAGAGTGGCCAGAGTTTGTGAAGAACTACGCTCCATGGTGGGCTTCCCACACACTGGACTGGCTCAAATATGGAAAGAAAGTTCAAGTGGTGCACTTTGAGGATTTAAAACGGGACCTTTTCTCTCAGTTAAAAGGCATGGTCATCTTTCTGGGCCTGGAAGTGTCAGAGGATCGCCTTCTGTGTGTGGAAGGACAGAAAGATGGCAACTTTAAACGCTCGGGGCTGAGAAAGCTGGAGTATGACCCTTATACAGTGGAAATGCGTGCAACCATTGACAGGCTTATTAAGACTGTGGATATGGAACTAAGAAAGAGGAACCTGTCTGGTGTGCCTGATGAGTACAGGCCCAGATGATACTCACCATTtagctttttagctttttttcaCAACACACGTTTTTAGATTTCAGTTTGTCAGCCATGTATGCACGCTTCCTTGTCACAGAAAAAAAGTTACAAGTTAAATGAgcctttttttttgcaattctgaCTGACTTTCTGGCAATTGGTAGTTTACATCTTACAATTTTGAATAATTCAAAGAAACTGAGAATTTCATGATTTAAATGTAGAATCGCATGCTATAAACAATTGTGCAAGATTAGAGAGATTCACTCAGAATTAAGGTCAAAAAAGTCATAATCGCAAGATAAAACAAGAGATTTCTTGGAATTGTGGGTTGGAATTGTGAGGTTTATTTTTAGAATCGGAAGATATAGActcaattctgaaaaaaaaggaagagttgcaagatataaactcagaattctgagGTAAAATGTCAGAATTAAACAACATAAGCTCATTGTAAAAACATAGCCCTacatatgtttctggagatcgtgaactATATAGaaagaagtatgtatggctgcatttaatccGTAAAGGAACGATATGTGGCGGTATGATGCTTTTCCTTTTTGCACTAGCAGCTGAACGCTTACCTCTGTATCgccggctttcccactgttaccagtttgtc

Function

symbol description
wscd2 Orthologous to human WSCD2 (WSC domain containing 2).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-060526-124 Orthologous to human WSCD2 (WSC domain containing 2).

Ensembl:

ensembl_id ENSDARG00000061819

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060192 True 2349 mRNA 0.47 8 20627200 20678300

Neighbor

gene id symbol gene type direction distance location
XLOC_030973 NA coding downstream 7861 20616071 ~ 20619339 (-)
XLOC_030972 NA coding downstream 12580 20600387 ~ 20614620 (-)
XLOC_030971 ficd coding downstream 135928 20485624 ~ 20491272 (-)
XLOC_030970 ISCU coding downstream 181118 20443888 ~ 20446082 (-)
XLOC_030969 NA coding downstream 206829 20416722 ~ 20420371 (-)
XLOC_030975 si:ch211-225b11.1 coding upstream 108472 20786772 ~ 20814588 (-)
XLOC_030976 pik3ip1 coding upstream 188272 20866572 ~ 20879527 (-)
XLOC_030977 si:ch211-225b11.4 coding upstream 207982 20886282 ~ 20921677 (-)
XLOC_030978 camk2b1 coding upstream 252952 20931252 ~ 21030996 (-)
XLOC_030979 si:dkey-13n15.2 coding upstream 355471 21033771 ~ 21044693 (-)
XLOC_030968 AL845326.1 non-coding downstream 218248 20408836 ~ 20408952 (-)
XLOC_030967 NA non-coding downstream 329761 20289359 ~ 20297439 (-)
XLOC_030981 NA non-coding upstream 561033 21239333 ~ 21242084 (-)
XLOC_030982 BX470224.4 non-coding upstream 614830 21293130 ~ 21293245 (-)
XLOC_030984 NA non-coding upstream 931058 21609358 ~ 21852227 (-)
XLOC_030985 CR848717.1 non-coding upstream 1058059 21736359 ~ 21737345 (-)
XLOC_030987 NA non-coding upstream 1248522 21926822 ~ 21934278 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000339_00233236_00247333 WSCD2 coding CI01000339 null 233166 ~ 247633 (-)