XLOC_030977 (si:ch211-225b11.4)


Basic Information

Item Value
gene id XLOC_030977
gene name si:ch211-225b11.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 20886282 ~ 20921677 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060196
TCTTGGCCTGTCCCGTCTCTGTCCTTCAGAGTTTGAGCAGACGGGGCTGCAGGAGTGTGTGGAGCTTCTGTTGAATGATCTGGAGACGGACAGAGGAGGACCTGCGCTGATCTCCACAGCTCTGTGTGCAGTCAGTGTGCTGCTCTCTCAGAGTGCAGATGTGTCTTTTCTCCAGCGCTGGTGTAAGTTATTAGAGAAGCACAGATGTCCCGATGCTCCCGAGGCCCTCAGATCAGCCTGTGCTCAGTCTCTGTGTCTGTGCGGTGTGTCTGTGGTGACCAGAAGCCTGACCAGTAGCCTCATACCCAAACATCTCAATACCAGcTTGATCAGTACAGGCCTCTTCCTGCTTCAGGATGAGAGTTCAGATGTGAGAGCGAAGGCGGCCATCTTTGCCTCTCTCCTCTGCTGTTCCCGACAGCCTGAAGCTCCTCAAAGGTGCTTCCACATGCAGGTGAACCAGGCTCTGCGCTCACTCCTGGACCTGCTCTTGGAGGAATTCTGGGATACCAGTGGTGCTTTGGAGGCCTTATTGTGTCACTTACCCAGCTGTGATCTGAATATAATACTGAAGCAAGCCAAAGATACACAATGTCGGAGCCTTTATGAGCCAGATGAAGCGAATGTGTTTGCAGAGCCATCTGTGATCTCAGAGTGTCTGCTGCCATACCTTTTGCGTCTGGTTAAACATTACCCACAATCCTCCAGCCTCGCAGAGAACCTTGAGCGCTGGGCCCGAAACAGTGCAGCCACTGTCAAAGAGAATCTCGCAACTTGTATGCAACTTCAATTAAGCGATGTCCTGAATCCTGATTGGCTGAGTTTGCTAATAGAACCCCATTTCCATGGTGCTCTTGCTGGCCTGTTCACCAGGGCGATTGTCCTGCTCCAGATGCTAAACGACTGTGACTCCATTCGACCTCTGCTTGACCCCTTGAGTTTATCTTCAGACCTTCAGGATATTCACAAGCGGTTTGTCCTAAATGGAGTCTTTCTTCCTCAGGTCTTCATTGATGCACTAAGGACAGACTAATCTAGTGCCGACACAGATCAGGGTTGCTTAATTGCGGATGCaagcttaattaaacacaaaaaaactccACTATTGATCGGGAAAAGCTGGTTGTTCTTTGCCAATTGTGCGAAGGAAGAATAACAGGCTTTGTGTTGTTGTGTAACACAAGAGAGACAATAAAGAAAACCTTTGCTTGTCTTGCATCAAACACCAACTCCAGATAATGGTCCATGACAGCAGCTCAGCAAGAGTGTCTAAATCTGACACAGCTGAAAGACACCATTGTTTCTGGATGACTGCTGATTTCTGAAATGGAGCACACTGCAGACGGGAACAAACAGACTATGAGAGAGTGTGTTCGTCTCTGCGCATGTTCATGTGCGTGTGTTCAACTGTGCCCACGCAACACCCTGAGGAGGGTATAGATATTttgatcacactttacaatgagatTCTATTAGTTAATGTTGGGTAATGTGTTTGCCAAtatgaactaagaatgaaca
>TCONS_00060197
ATGACCATTGTTAACTTTTCTTTGGAAGATGCTGATGCAGTTCTGAAGTCTGTTGTTTTAGAGGATCAGTTTTCATCTGACGTCAAAGACACGCTAAGGAGTTTCTTGCTGAAGCTCACTGAAAATGGCAGGATCACAGGTAAACGGAGCAGAGACCGCTCGCTGGAGGAGGCTTCACAGATCCTGCAGAAGATCCCAAAAGAAGCACTTCATTCCTTACAGCCTCCTGCTCTTCATCGACTGATTCAGCTTATTCTGGCCTTACAGTTAGAAGCAGTGACCACTTCATCTGCCTGCCGCAAATTAGACCAAATGCTTCAGGTTTTCGCTGTAATAAACCACTCCGTTGTCTTTGAGGAAGTTAAACAGTGTCTGCTGAACATTTTGCACCAAAAACAgGTGTTTTCATTAAAAGATCTTCAGATAATCTGTATGTTCTTGGAGGACAGCACAATAGGACGAGAAGTTCTGAAGTCTGAATGCACCACCCTGCTTGGTAAAGTCGCTGAGCTGATTCCTGTTGTTATGTCAGATGAAGCATCCAGAAATGGACCCTTGTGCTACCAGATGGTTAAGGGTTGTCTGCAAGTGTTTCAGCTGCTGCCAGGTGAAGTGGCGCAGTTGGTCTACAGTAAAGACAGTGTAAATATTACTGCAAGGGGTATTCTGGAGTTCCTGATGAGGATTATCTTGGGAGAGGTTTCCAGCAGAGATACACGGCTGTTGGCAGGCACTGCGGTTGCAATGCTGCTCAGCACTGCAACAGACAGTCAGTGTGCTGGATCAGCTGCCTGGAGTCTACTACAAATCACTAAAACAGAGCCGTGGCGGCTGACAGTAGGTGAACTACAGGTAAACTGCAGCTCCAGATGTCAGGACGGGGTGGACAGATTGGCTGTCTGCAGGGGCTTGTTAACATGCTGCAAAAATGACGTTCTTGTCAGTCGCCACAGCAACCAGAAGACTTGCTTTCTGCTCCATGGGTTGCTCCCCTTCATCTCGGCCCTTTGTGAAGAAAAGCTGGACTGTCATTACTTTGTTTTTCAAGTGTTTACGATTTGGCTGAAGAGGCTGAAAGAGTGTCTCAGTGAGGTTTGGGAAGTTACCGGTGCACCTTTAGATTCAGACCTCCAGCACCGTCTAACGCAAATCATTTGGAGGAATTCAGAGAGTCCGTTGGATGGTGTTGCAGAGGTGGCACGTAGTGCTTTCTGTCTCTTTATGGAGATCTATGAGAAGGATTGTCAGCACTTTGGGACGGAGAAATCACTTTATGTGGAGTTACTGAAGAGGATTTCAGAGTTGCCTTGGGAGTCAAAAGCAAAGTATTTACCACTTACTGCAGTTTTACCATACACAGGAACAAACAAGGTTTTGGAACTGTATCCAGCCCTTCCCTATCACCTCCTTAAATGCCTCTCCACCAATCACCTTTCTCCATGTGCCTCAGAAGTCTACAAGTCCCTTCTCCAGGAACAGAAACGTGAACTTATTATAATTGCATCAAAAGAAGCCCCTCCCACTGACCAGTACTTAGCCAATCAATGGGCTCATCAATGGCAACCAGTCATCCTGGAGGCTTTGACTTCAGAAATAACACTACTTCAAAACAATGCTTCTAGTCATCTCCTGCCAACAACTCTACGCACATTTCCTGGTGCCTTCAATACTCTTTTGTCAGCTCTGAACCCCTCGGCTCCTGGTCACCTTCATGCATGGGCCTGTGTCATGAGCGCACAGCGGGCCACAAGTGGACGTTCACTCTGGGGTGCTGAAAGTTCCCATGTTCACCAGACTCTCCATCTCGCCCTGTGCTCTCTGGATGACAGCGTTCGACTCGCAGCTCTCAACCTCCTCTGCTGCAGTCCAAAGACTAACGAAGCCCCATCACAGCTGGAGTATTCGGCTCTCAGAGACTTCATCCCGCTCAATCTTAACTGCGAATCATCTCCGTTTCGCCAACATCTGCAGGCGGCACTTAGGAAATTCCTGGTCAGAATAAGAGACAGTTGCATGGCGATCATCAAGGGGCGTAATAGTAAAAAAGGGCTGACAGAGGAAGAGGTGGCGGAGATTGAACAAGGAGTCGAGTTTGTTGAGTGGCTCTTCCAGCTTTCCTTGGTTTATTTGAGTCCTGACAGCAGTTACCAGAGGAAAAAGACGGTTCTCCTCCTGCTGTGTGCAGTGCTGGAAACATGCACTGACACCTGGAGTCCTGACAGAAAGAAGGGCCAACCACCTGCCAATATGTCTACTCTTATAAACTGGGCTAAAGACAGAGGAAAGTGGGATTTCTTCTCAAAGTCAAAGCTATTGGTCTTGATTGGCTGTTTGGAGGATTCGACCAATGAGATTCGGGAATTGTCCGCAGAGTTGCTTTTCCGATTTTTCCCCTCATCTCTTCCTGATGATGTCACATGTGTGCTGTTCAGCCGAGCAGATCAGCTTCTCCAGAGCCCACGGGTGCAGGAGGCTCAGATGGGGGCACTAATGGTCAAACTACTGCTGCAGAAGGCTGATGGAGTATTTAACCAGGGGGAGAAGCAGTCAGTGAAGCTGATTACATTTCTTCTGTCCAAATTGGAGCAGCATTATCTCACTGCCAGGAGTGACATGTTGCTTGCGGCTCGCACAACACCTGTACATGGCATTGTAAGTGCTCTGCAGAGGGGTCTGCTGGAGGTGCCAGGGGTCCTGCTAGAGTCAATAACCCACAGTATTGCAGGAGAGCTTGTGCTTTTGTTGGAAAAGCTCACTCTGGTTCTGCTAGGTGTTCTTTATGGCAACCAGGACACTGAGGAGAAAGaTGTTCCTCCTTCATTCTGTGACATGGGGAATGCAATCAGCTCACTGATTGGTCAGGGTGGAGTCGATGGGGTGGGGCTTGATGAGGATGGTGAGGAGAATGTGCTGCTGTCTGAGGAACACAGTCTGGTTCTGACCTGCTGCTGGGTCTCCTTGAAGGAAATAGGTATTTTTCTGGGCTCTCTGGTGGAGAGAATCCTGTCACTTCACTGTGAGGAGCTGAAACTGAGTGTGGAGGAGCTCAGGACAGCTTCCAAAGTCTTCAAAGACATCATTCTGAAATGTAGACACTGGGGGGCAGTGGAGGGCTGCTGTGTGGGCTTCACCAAGTTCTGCAGAGCTTTGTTGAGCAGTTCTGATCCAGACATCCGGCAGATCCCTTCACTTATGCTACAGCAGGGCCTTTCTGTTCTCCAGTCTCCCAGCAGTACATCAGTGACGCGGCGTGCCGCTGGTCTACCCATGCTGATTTTGGGTGTCTTGGCTGCTGAAGACTCCAGCAAATCTCGCCCTTTGTTGGCCCACACCATAAACACCCTACTGGACACAGCCAAAGCTCTTCTGCCCTCAGACTGGGACCAAACTCTTGACTTACCACAGGTCTGTGCCGTTCATACTCTTCAGGCCCTGGTGAAGGGCTCCAGTCTGGGTGTAGCTGTTCTTCAGTTCACCCCTGCGATGGCTGTTCTGTCACTTACCCTACTCAGCTCGGCATGCTGGGCCATGAGGAACGCAGCCCTGCAGCTCTACAGCTCTCTCTGCACAAGGATGTTGGGTCAACAGAAGGCTGGTGAAGGTTCCAGTAATTCTGGCATGTCTGCTGCTTCCTTCTTTCACCTCTATCCAGCCCTACAGCCCTTCCTTCAGGGGGCACTGGAAACTGCAGCTAATGACCTCCATGATGCCACCCTCCTTTTACATCCAGCTCTCTACCCTGTGCTCACCCTGCTCTCCAAACTACAGCCTGGTGCTGAAAAACAAACAAGGGCTCTGTCAGAATTCCTGCCTCCGCTTTTGCTCCTCTCTGCCAGCCCGGTCTATGGCGTACGAGTGATGTCATCAAAAGCTCTAGTTGCTATGATACCAACCAGTGAGTATATGGCAACCGTCCTGCAGTTAGTGAAAGATCTGCCGGAATCACCGGACGTTGTGAGCTGCCACAACAGACTGCATGGAAAACTGCTGCAGACACGAGCCATACTGACCCGAGCTCTCAGATCAAGCGTTTCGTTATCTCTCAGTGAGGTTGTGGATGTGTTTGAGTCAAGACTATGGTTGGGATCTTCAAAGCAACGGTGCCCGCTGGTCCGGCAGTCATATGTTGATATTGTGAGGCTGATACGAGGCCACTGCTCTGCTGGTTTCCTCAGCCAGCTCTCCTCTCAGCTGCTGCATGAGATTCAAAGGACTCCAGATATACTAGAGATTGGCGCAGCTTCATTCCACCAAAGCACAGTGAATTTCCTGTGTGGGGATCCTGAGTGGGCGTGTCAGGCGTGGAGGAGTCTGGCTAATGGCAATGCAGTTGTGCAGCTCTCTTTGGTCAAGTCTGTGACAGATGGGCATGGTTGGAGAGGAACAGACCTACAGCAGGTTATTGAGGGAGAGCTGAAGGCCAACCTGAAGGCGGCGCTAATGAGCCAGAGTGTGGATTACAGGGCTGCGTATTTGACTGCATTAGTTGAGGTTTTGACCCCAGAGGAAGAGAGTCTTGGCCTGTCCCGTCTCTGTCCTTCAGAGTTTGAGCAGACGGGGCTGCAGGAGTGTGTGGAGCTTCTGTTGAATGATCTGGAGACGGACAGAGGAGGACCTGCGCTGATCTCCACAGCTCTGTGTGCAGTCAGTGTGCTGCTCTCTCAGAGTGCAGATGTGTCTTTTCTCCAGCGCTGGTGTAAGTTATTAGAGAAGCACAGATGTCCCGATGCTCCCGAGGCCCTCAGATCAGCCTGTGCTCAGTCTCTGTGTCTGTGCGGTGTGTCTGTGGTGACCAGAAGCCTGACCAGTAGCCTCATACCCAAACATCTCAATACCAGcTTGATCAGTACAGGCCTCTTCCTGCTTCAGGATGAGAGTTCAGATGTGAGAGCGAAGGCGGCCATCTTTGCCTCTCTCCTCTGCTGTTCCCGACAGCCTGAAGCTCCTCAAAGGTGCTTCCACATGCAGGTGAACCAGGCTCTGCGCTCACTCCTGGACCTGCTCTTGGAGGAATTCTGGGATACCAGTGGTGCTTTGGAGGCCTTATTGTGTCACTTACCCAGCTGTGATCTGAATATAATACTGAAGCAAGCCAAAGATACACAATGTCGGAGCCTTTATGAGCCAGATGAAGCGAATGTGTTTGCAGAGCCATCTGTGATCTCAGAGTGTCTGCTGCCATACCTTTTGCGTCTGGTTAAACATTACCCACAATCCTCCAGCCTCGCAGAGAACCTTGAGCGCTGGGCCCGAAACAGTGCAGCCACTGTCAAAGAGAATCTCGCAACTTGTATGCAACTTCAATTAAGCGATGTCCTGAATCCTGATTGGCTGAGTTTGCTAATAGAACCCCATTTCCATGGTGCTCTTGCTGGCCTGTTCACCAGGGCGATTGTCCTGCTCCAGATGCTAAACGACTGTGACTCCATTCGACCTCTGCTTGACCCCTTGAGTTTATCTTCAGACCTTCAGGATATTCACAAGCGGTTTGTCCTAAATGGAGTCTTTCTTCCTCAGGTCTTCATTGATGCACTAAGGACAGACTAA

Function

symbol description
si:ch211-225b11.4 Predicted to be involved in tRNA methylation. Predicted to be active in cytosol.

GO:

id name namespace
GO:0030488 tRNA methylation biological_process
GO:0005829 cytosol cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-060526-114 Predicted to be involved in tRNA methylation. Predicted to be active in cytosol.

Ensembl:

ensembl_id ENSDARG00000093563

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060196 False 1521 mRNA 0.48 5 20886282 20893993
TCONS_00060197 True 5547 mRNA 0.50 31 20886770 20921677

Neighbor

gene id symbol gene type direction distance location
XLOC_030976 pik3ip1 coding downstream 6755 20866572 ~ 20879527 (-)
XLOC_030975 si:ch211-225b11.1 coding downstream 71694 20786772 ~ 20814588 (-)
XLOC_030974 wscd2 coding downstream 207982 20627200 ~ 20678300 (-)
XLOC_030973 NA coding downstream 266943 20616071 ~ 20619339 (-)
XLOC_030972 NA coding downstream 271662 20600387 ~ 20614620 (-)
XLOC_030978 camk2b1 coding upstream 9575 20931252 ~ 21030996 (-)
XLOC_030979 si:dkey-13n15.2 coding upstream 112094 21033771 ~ 21044693 (-)
XLOC_030980 si:dkey-13n15.2 coding upstream 137782 21059459 ~ 21065094 (-)
XLOC_030981 NA coding upstream 317656 21239333 ~ 21242084 (-)
XLOC_030982 BX470224.4 coding upstream 371453 21293130 ~ 21293245 (-)
XLOC_030969 NA non-coding downstream 465911 20416722 ~ 20420371 (-)
XLOC_030968 AL845326.1 non-coding downstream 477330 20408836 ~ 20408952 (-)
XLOC_030967 NA non-coding downstream 588843 20289359 ~ 20297439 (-)
XLOC_030984 NA non-coding upstream 687681 21609358 ~ 21852227 (-)
XLOC_030985 CR848717.1 non-coding upstream 814682 21736359 ~ 21737345 (-)
XLOC_030987 NA non-coding upstream 1005145 21926822 ~ 21934278 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000339_00397469_00403594 NA coding CI01000339 null 397469 ~ 403594 (-)