RNA id: TCONS_00061985


Basic Information

Item Value
RNA id TCONS_00061985
length 538
lncRNA type inter_gene
GC content 0.49
exon number 3
gene id XLOC_030984
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 21609358 ~ 21852227 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACGTGGGCGCGCTGTTGTACTTTGCTCGTTCCCGCCAGCGCGCGACACCTCATTCTCCCAGTCTGGCTGTTTAGTGTGTAACACGCGCCCTCACACTTTCTGTCACACACTCCAACAACGTGAGTACAGAAACCGGTTGTCTTAAATGCACGAAGAAACACATGAGCGAGCAGAGATAAGTCTGCTGGCCGGTATCTGACTCAGGTTTCACTCTGAGCACATCATTGGTTCTGGTGACATCCGTTACTTTGCCGCGCTGATGACATCTTATTTAAGCGCGCAGGCAGATGACAAGACGAGAAACCTTTACTATCAGGCTTGTCTCTTCCTGCATGGATGATCAATAAATCAGCAGCCTCACTGGCCGAACACAAGAAAGAAATAGACAATCCTCTCAAGACGAGCTATACTATAGCAATGTATGGGAAACCAGTTAAATTCAGTGACCCACCACATCCCCCTCCCCTTCCATTCGaggtaaagagagagagaggttgaGGCAGAGAGGGATGGTTTCCCTGAAGGCTGGTTTATAAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061981 lncRNA downstream 570001 21239333 ~ 21242084 (-) True XLOC_030981
TCONS_00061980 lncRNA downstream 1192746 20616071 ~ 20619339 (-) True XLOC_030973
TCONS_00061979 lncRNA downstream 1197465 20600387 ~ 20614620 (-) True XLOC_030972
TCONS_00061978 lncRNA downstream 1391714 20416722 ~ 20420371 (-) True XLOC_030969
TCONS_00061977 lncRNA downstream 1392226 20416722 ~ 20419859 (-) False XLOC_030969
TCONS_00060208 lncRNA upstream 7483 21859698 ~ 21860343 (-) False XLOC_030986
TCONS_00060209 lncRNA upstream 15963 21868178 ~ 21880227 (-) True XLOC_030986
TCONS_00061987 lncRNA upstream 74607 21926822 ~ 21933493 (-) False XLOC_030987
TCONS_00061988 lncRNA upstream 74607 21926822 ~ 21934278 (-) True XLOC_030987
TCONS_00060217 lncRNA upstream 188062 22040277 ~ 22041856 (-) False XLOC_030991
TCONS_00060205 mRNA downstream 287834 21296567 ~ 21524251 (-) False XLOC_030983
TCONS_00060204 mRNA downstream 287834 21296567 ~ 21524251 (-) True XLOC_030983
TCONS_00060203 mRNA downstream 389695 21295747 ~ 21422390 (-) False XLOC_030983
TCONS_00060201 mRNA downstream 746991 21059459 ~ 21065094 (-) True XLOC_030980
TCONS_00060200 mRNA downstream 767392 21033771 ~ 21044693 (-) True XLOC_030979
TCONS_00060207 mRNA upstream 499 21852714 ~ 21888368 (-) False XLOC_030986
TCONS_00060210 mRNA upstream 87518 21939733 ~ 22001053 (-) False XLOC_030988
TCONS_00060211 mRNA upstream 88711 21940926 ~ 21970881 (-) False XLOC_030988
TCONS_00060213 mRNA upstream 99666 21951881 ~ 22001003 (-) True XLOC_030988
TCONS_00060214 mRNA upstream 159360 22011575 ~ 22019061 (-) True XLOC_030989
TCONS_00060206 other downstream 74740 21736359 ~ 21737345 (-) True XLOC_030985
TCONS_00060202 other downstream 518840 21293130 ~ 21293245 (-) True XLOC_030982
TCONS_00060189 other downstream 1366412 20444226 ~ 20445673 (-) False XLOC_030970
TCONS_00060188 other downstream 1366412 20444226 ~ 20445673 (-) True XLOC_030970
TCONS_00060186 other downstream 1403133 20408836 ~ 20408952 (-) True XLOC_030968
TCONS_00060212 other upstream 91167 21943382 ~ 21952134 (-) False XLOC_030988
TCONS_00060221 other upstream 235441 22087656 ~ 22096908 (-) True XLOC_030993
TCONS_00060223 other upstream 382192 22234407 ~ 22234505 (-) True XLOC_030995
TCONS_00060225 other upstream 583571 22435786 ~ 22437983 (-) False XLOC_030997
TCONS_00060226 other upstream 585096 22437311 ~ 22438595 (-) True XLOC_030997