RNA id: TCONS_00061977


Basic Information

Item Value
RNA id TCONS_00061977
length 1099
lncRNA type antisense_over
GC content 0.36
exon number 2
gene id XLOC_030969
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 20416722 ~ 20420371 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

agttcagtttattttttattttcctggTAATCAGTAAGACTCTTTATAACTGAAGCAGATGAATGAACAAAAGTGGAACAGTTATGCACAAAACTCCTTCCTTTTCCATTGTATCAACGAAAGCTTTAAATGCTCTCAGTATGCATCATGATGAGGGAAATGGGTTCTTTAAAATCAGCAAATTCCAAAATGGGACAAACACCTTCCTATAGgcaaagaaaaaaggaaaactaaaacaaaagacGGCATATTTACAACGAATCAAAATAAATCCAGCCTTATTCCTGCATTATCTTTTCAACCTACAAAAAACCCTTGTCACTTCATTCGCTCCTCTGAAAGCACACACTCGAGGCCTCCTGAGGCCAAGGATCCATCACACGTCCTAAAGATGATCCAGCTTGGCACATCTGTACCCATAAATACAACCCCTACATAGTCAAACCCTTCACTTTAAAACTGCACCAAAAACAAttgaaagagagacagagagagagagagagagagagagagagagaatgagaggtaTTGAGTTTTTGCTGTCGATGAAGCCTTCCCtgcttttctttcttaaatattttgtcttgttttagtcaaaatatctacaaattcttaaatctagaagcatttctagacaagtaaaaataccAAAAGCTAAAATTTTGGAACATACCTtggaatttttttgttgttgctctgAGCTTATATTAGGATGAGAAACTAAAGACATTTTAGAGGTATGCGGTGAGACCTGTAGGTTTCtggattcatttaaaaaaaaAAAAGTGCAGATGTGTCAATATGGATTAGTAGGGGAAAAGCTGACTCTTTTTTTTGCCAGCAAGTGTCTGAGGCTGTAGGAAAAGCACACATTGGCTTTAAACTAgaattactttaaattatttgGCCTATTAATATCTTTAAATGTGGGTTCATGCACAGTGAGACATTTGTATGATTTTCCAGTACAGTTTTGTAAACGTTTTCGACTCTACATGTTTGCCGGCTtgattaaaatctttatttttattctctAGAAAGACAGCTAtaacatttgaaaacaaaatccAGTGATTTCCCCTCCTTGCATATTGCTTTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061976 lncRNA downstream 119283 20289359 ~ 20297439 (-) True XLOC_030967
TCONS_00061975 lncRNA downstream 307457 20105008 ~ 20109265 (-) True XLOC_030961
TCONS_00060177 lncRNA downstream 453166 19960680 ~ 19963556 (-) True XLOC_030959
TCONS_00061974 lncRNA downstream 453201 19960680 ~ 19963521 (-) False XLOC_030959
TCONS_00060171 lncRNA downstream 971773 19442678 ~ 19444949 (-) True XLOC_030954
TCONS_00061979 lncRNA upstream 180528 20600387 ~ 20614620 (-) True XLOC_030972
TCONS_00061980 lncRNA upstream 196212 20616071 ~ 20619339 (-) True XLOC_030973
TCONS_00061981 lncRNA upstream 819474 21239333 ~ 21242084 (-) True XLOC_030981
TCONS_00061982 lncRNA upstream 1189499 21609358 ~ 21852227 (-) False XLOC_030984
TCONS_00061983 lncRNA upstream 1336798 21756657 ~ 21852215 (-) False XLOC_030984
TCONS_00060185 mRNA downstream 211647 20197138 ~ 20205075 (-) True XLOC_030966
TCONS_00060183 mRNA downstream 221372 20188438 ~ 20195350 (-) False XLOC_030965
TCONS_00060184 mRNA downstream 221846 20189017 ~ 20194876 (-) True XLOC_030965
TCONS_00060182 mRNA downstream 231057 20170960 ~ 20185665 (-) True XLOC_030964
TCONS_00060181 mRNA downstream 281043 20125934 ~ 20135679 (-) True XLOC_030963
TCONS_00060187 mRNA upstream 24029 20443888 ~ 20446082 (-) False XLOC_030970
TCONS_00060190 mRNA upstream 65765 20485624 ~ 20491272 (-) False XLOC_030971
TCONS_00060191 mRNA upstream 66507 20486366 ~ 20491198 (-) True XLOC_030971
TCONS_00060192 mRNA upstream 207341 20627200 ~ 20678300 (-) True XLOC_030974
TCONS_00060193 mRNA upstream 366913 20786772 ~ 20814576 (-) False XLOC_030975
TCONS_00060186 other downstream 7770 20408836 ~ 20408952 (-) True XLOC_030968
TCONS_00060180 other downstream 295698 20116201 ~ 20121024 (-) True XLOC_030962
TCONS_00060172 other downstream 924207 19489581 ~ 19492515 (-) False XLOC_030955
TCONS_00060168 other downstream 1021013 19391567 ~ 19395709 (-) True XLOC_030953
TCONS_00060165 other downstream 1080195 19334206 ~ 19336527 (-) True XLOC_030952
TCONS_00060189 other upstream 24367 20444226 ~ 20445673 (-) False XLOC_030970
TCONS_00060188 other upstream 24367 20444226 ~ 20445673 (-) True XLOC_030970
TCONS_00060202 other upstream 873271 21293130 ~ 21293245 (-) True XLOC_030982
TCONS_00060206 other upstream 1316500 21736359 ~ 21737345 (-) True XLOC_030985
TCONS_00060212 other upstream 1523523 21943382 ~ 21952134 (-) False XLOC_030988

Expression Profile

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