Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00060183 |
| length | 1682 |
| RNA type | mRNA |
| GC content | 0.43 |
| exon number | 11 |
| gene id | XLOC_030965 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007116.7 |
| NCBI id | CM002889.2 |
| chromosome length | 72500376 |
| location | 20188438 ~ 20195350 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0036088 | D-serine catabolic process | biological_process |
| GO:0046416 | D-amino acid metabolic process | biological_process |
| GO:0055114 | oxidation-reduction process | biological_process |
| GO:0055130 | D-alanine catabolic process | biological_process |
| GO:0006562 | proline catabolic process | biological_process |
| GO:0019478 | D-amino acid catabolic process | biological_process |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0003884 | D-amino-acid oxidase activity | molecular_function |
| GO:0016491 | oxidoreductase activity | molecular_function |
| GO:0071949 | FAD binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-050913-127 | Predicted to enable D-amino-acid oxidase activity. Predicted to be involved in D-alanine catabolic process; D-serine catabolic process; and proline catabolic process. Predicted to act upstream of or within D-amino acid metabolic process. Predicted to be located in peroxisome. Predicted to be active in cytoplasm. Is expressed in yolk syncytial layer. Human ortholog(s) of this gene implicated in schizophrenia. Orthologous to human DAO (D-amino acid oxidase). |
| ensembl_id | ENSDART00000139675 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00061975 | lncRNA | downstream | 79173 | 20105008 ~ 20109265 (-) | True | XLOC_030961 |
| TCONS_00060177 | lncRNA | downstream | 224882 | 19960680 ~ 19963556 (-) | True | XLOC_030959 |
| TCONS_00061974 | lncRNA | downstream | 224917 | 19960680 ~ 19963521 (-) | False | XLOC_030959 |
| TCONS_00060171 | lncRNA | downstream | 743489 | 19442678 ~ 19444949 (-) | True | XLOC_030954 |
| TCONS_00061973 | lncRNA | downstream | 852770 | 19334206 ~ 19335668 (-) | False | XLOC_030952 |
| TCONS_00061976 | lncRNA | upstream | 94009 | 20289359 ~ 20297439 (-) | True | XLOC_030967 |
| TCONS_00061977 | lncRNA | upstream | 221372 | 20416722 ~ 20419859 (-) | False | XLOC_030969 |
| TCONS_00061978 | lncRNA | upstream | 221372 | 20416722 ~ 20420371 (-) | True | XLOC_030969 |
| TCONS_00061979 | lncRNA | upstream | 405037 | 20600387 ~ 20614620 (-) | True | XLOC_030972 |
| TCONS_00061980 | lncRNA | upstream | 420721 | 20616071 ~ 20619339 (-) | True | XLOC_030973 |
| TCONS_00060182 | mRNA | downstream | 2773 | 20170960 ~ 20185665 (-) | True | XLOC_030964 |
| TCONS_00060181 | mRNA | downstream | 52759 | 20125934 ~ 20135679 (-) | True | XLOC_030963 |
| TCONS_00060179 | mRNA | downstream | 65436 | 20115774 ~ 20123002 (-) | False | XLOC_030962 |
| TCONS_00060178 | mRNA | downstream | 199666 | 19969794 ~ 19988772 (-) | True | XLOC_030960 |
| TCONS_00060176 | mRNA | downstream | 255817 | 19886055 ~ 19932621 (-) | True | XLOC_030958 |
| TCONS_00060185 | mRNA | upstream | 1788 | 20197138 ~ 20205075 (-) | True | XLOC_030966 |
| TCONS_00060187 | mRNA | upstream | 248538 | 20443888 ~ 20446082 (-) | False | XLOC_030970 |
| TCONS_00060190 | mRNA | upstream | 290274 | 20485624 ~ 20491272 (-) | False | XLOC_030971 |
| TCONS_00060191 | mRNA | upstream | 291016 | 20486366 ~ 20491198 (-) | True | XLOC_030971 |
| TCONS_00060192 | mRNA | upstream | 431850 | 20627200 ~ 20678300 (-) | True | XLOC_030974 |
| TCONS_00060180 | other | downstream | 67414 | 20116201 ~ 20121024 (-) | True | XLOC_030962 |
| TCONS_00060172 | other | downstream | 695923 | 19489581 ~ 19492515 (-) | False | XLOC_030955 |
| TCONS_00060168 | other | downstream | 792729 | 19391567 ~ 19395709 (-) | True | XLOC_030953 |
| TCONS_00060165 | other | downstream | 851911 | 19334206 ~ 19336527 (-) | True | XLOC_030952 |
| TCONS_00060164 | other | downstream | 1135941 | 19051905 ~ 19052497 (-) | True | XLOC_030950 |
| TCONS_00060186 | other | upstream | 213486 | 20408836 ~ 20408952 (-) | True | XLOC_030968 |
| TCONS_00060189 | other | upstream | 248876 | 20444226 ~ 20445673 (-) | False | XLOC_030970 |
| TCONS_00060188 | other | upstream | 248876 | 20444226 ~ 20445673 (-) | True | XLOC_030970 |
| TCONS_00060202 | other | upstream | 1097780 | 21293130 ~ 21293245 (-) | True | XLOC_030982 |
| TCONS_00060206 | other | upstream | 1541009 | 21736359 ~ 21737345 (-) | True | XLOC_030985 |
