XLOC_030955 (mmab)


Basic Information

Item Value
gene id XLOC_030955
gene name mmab
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 19489581 ~ 19494048 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060172
ATCAGCAAGAGAGAGTCACATAACGAAAACAAAGTTCAGCTCTCAGTCTGTGTCTGAACTGGAGAAGTGGATTGATTCCTTCACAGAGGAGCTTCCGCCGCTCACCAGCTTCATACTCCCTTCTGGCGGTAAAAGCAGTGCAGCTCTACATGTGGCCAGAGCAGTGTGCCGAAGAGCTGAACGCTGATTGAGTGACTACTTGTTCACAGTGGCTAGATATGCTGCAATGAAAGACGGTAATGCAGAAACCATTTACAAAAGGCAGGAATAAAGGACGAAGACAGCAAACTTGAATTTGaacaatttgtttatgtttatttatatgtgcGCATTTGTGTACGTGTATTCAAACACTTTAGGGATCAATAATCATTAAGGCAATGTCTGTTCTAGATACTTTACTGATAATAGTCCTGTggaattattaaaatatcaattaCATTTTGATGGA
>TCONS_00060173
AGGAGTCAAATGTGTGAATCGTAAACACAGGAAGCGCGATTGAAAATGTTTTAGCGTGTTAAAATGTCATCTCTCGTTACCAGGTCCACAAGTCTTCACCGTGTCCTTCGCTTAGGGACATGTATGAACATAAAGCAGATGCGTGTGTGTGGGGATAGAGGAAGATATGCCAGCAGTACATCAGAGGAAAACAGAAGAATTCCCAAGATATACACTAAAACTGGGGATAAAGGTTTCTCCAGTACCTTCACAGGTGAGAGGAGACCCAAGGAGGATCATATATTTGATGCTTTGGGAACAACAGATGAATTATCATCAGCAATAGGGTTAGCACGAGAATTTTGCATTGACAGCGGCCATTCATTCACAGATCAGCTGGAGAAGGTCCAGTGTGTACTTCAGGATGTAGGATCCAATATCGCCACTCCTCGCTCATCAGCAAGAGAGAGTCACATAACGAAAACAAAGTTCAGCTCTCAGTCTGTGTCTGAACTGGAGAAGTGGATTGATTCCTTCACAGAGGAGCTTCCGCCGCTCACCAGCTTCATACTCCCTTCTGGCGGTAAAAGCAGTGCAGCTCTACATGTGGCCAGAGCAGTGTGCCGAAGAGCTGAACGCTGTGTCGCTCCTGTTGTCCGTTCAGGTGAGACAGATCCTGAAGTTGCCAAATATCTGAACAGATTGAGTGACTACTTGTTCACAGTGGCTAGATATGCTGCAATGAAAGACGGTAATGCAGAAACCATTTACAAAAGGCAGGAATAAAGGACGAAGACAGCAAACTTGAATTTGaacaatttgtttatgtttatttatatgtgcGCATTTGTGTACGTGTATTCAAACACTTTAGGGATCAATAATCATTAAGGCAATGTCTGTTCTAGATACTTTACTGATAATAGTCCTGTggaattattaaaatatcaattaCATTTTGATGGA

Function

symbol description
mmab Predicted to enable cob(I)yrinic acid a,c-diamide adenosyltransferase activity. Human ortholog(s) of this gene implicated in inherited metabolic disorder and methylmalonic acidemia cblB type. Orthologous to human MMAB (metabolism of cobalamin associated B).

GO:

id name namespace
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
ko00860 Porphyrin and chlorophyll metabolism

ZFIN:

id description
ZDB-GENE-060526-232 Predicted to enable cob(I)yrinic acid a,c-diamide adenosyltransferase activity. Human ortholog(s) of this gene implicated in inherited metabolic disorder and methylmalonic acidemia cblB type. Orthologous to human MMAB (metabolism of cobalamin associated B).

Ensembl:

ensembl_id ENSDARG00000068344

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060172 False 451 processed_transcript 0.40 4 19489581 19492515
TCONS_00060173 True 945 mRNA 0.43 9 19489581 19494048

Neighbor

gene id symbol gene type direction distance location
XLOC_030954 kctd10 coding downstream 44632 19436483 ~ 19444949 (-)
XLOC_030953 foxn4 coding downstream 89415 19385503 ~ 19400166 (-)
XLOC_030952 NA coding downstream 153054 19334206 ~ 19336527 (-)
XLOC_030951 NA coding downstream 173933 19312775 ~ 19315648 (-)
XLOC_030950 fam214b coding downstream 437084 19021786 ~ 19052497 (-)
XLOC_030956 trpv4 coding upstream 301929 19795977 ~ 19833310 (-)
XLOC_030957 gltpa coding upstream 356780 19850828 ~ 19861766 (-)
XLOC_030958 git2a coding upstream 392007 19886055 ~ 19932621 (-)
XLOC_030959 NA coding upstream 466632 19960680 ~ 19963556 (-)
XLOC_030960 slc6a4b coding upstream 475746 19969794 ~ 19988772 (-)
XLOC_030949 NA non-coding downstream 480807 19008646 ~ 19008774 (-)
XLOC_030942 NA non-coding downstream 705147 18783738 ~ 18784434 (-)
XLOC_030940 NA non-coding downstream 1064944 18317903 ~ 18424637 (-)
XLOC_030961 NA non-coding upstream 610960 20105008 ~ 20109265 (-)
XLOC_030967 NA non-coding upstream 795311 20289359 ~ 20297439 (-)
XLOC_030968 AL845326.1 non-coding upstream 914788 20408836 ~ 20408952 (-)
XLOC_030969 NA non-coding upstream 922674 20416722 ~ 20420371 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000071_01086147_01088260 NA coding CI01000071 null 1086147 ~ 1088399 (+)